{"id":"https://openalex.org/W2100057485","doi":"https://doi.org/10.1109/csb.2003.1227350","title":"A computational approach to reconstructing gene regulatory networks","display_name":"A computational approach to reconstructing gene regulatory networks","publication_year":2004,"publication_date":"2004-03-23","ids":{"openalex":"https://openalex.org/W2100057485","doi":"https://doi.org/10.1109/csb.2003.1227350","mag":"2100057485"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2003.1227350","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103323933","display_name":"X. Deng","orcid":"https://orcid.org/0009-0009-6889-856X"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"X. Deng","raw_affiliation_strings":["Department of Computer Science College of Information Science and Technology, University of Nebraska Omaha, Omaha, NE, USA","Dept. of Comput. Sci., Nebraska Univ., Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science College of Information Science and Technology, University of Nebraska Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Nebraska Univ., Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047703641","display_name":"Hesham Ali","orcid":"https://orcid.org/0000-0001-6675-7987"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Ali","raw_affiliation_strings":["Department of Computer Science College of Information Science and Technology, University of Nebraska Omaha, Omaha, NE, USA","Dept. of Comput. Sci., Nebraska Univ., Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science College of Information Science and Technology, University of Nebraska Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Nebraska Univ., Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5103323933"],"corresponding_institution_ids":["https://openalex.org/I122266389"],"apc_list":null,"apc_paid":null,"fwci":0.3508,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.57755028,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"413","last_page":"414"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7011970281600952},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6270791888237},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6045496463775635},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5271080732345581},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4841626286506653},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4830965995788574},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.47947248816490173},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41591715812683105},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38741621375083923},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36277827620506287},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30380645394325256},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20740202069282532},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16192924976348877},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13786253333091736},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10046529769897461}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7011970281600952},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6270791888237},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6045496463775635},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5271080732345581},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4841626286506653},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4830965995788574},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.47947248816490173},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41591715812683105},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38741621375083923},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36277827620506287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30380645394325256},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20740202069282532},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16192924976348877},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13786253333091736},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10046529769897461},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2003.1227350","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2034241086","https://openalex.org/W2108020239","https://openalex.org/W2133241531","https://openalex.org/W2150926065","https://openalex.org/W2163296727","https://openalex.org/W4388252848"],"related_works":["https://openalex.org/W2391251536","https://openalex.org/W2362198218","https://openalex.org/W1982750869","https://openalex.org/W2019521278","https://openalex.org/W1984922432","https://openalex.org/W2113077220","https://openalex.org/W2375008505","https://openalex.org/W2350679292","https://openalex.org/W2086348228","https://openalex.org/W2131550814"],"abstract_inverted_index":{"With":[0,154],"the":[1,52,73,81,85,93,111,114,158,171,175],"rapid":[2],"accumulation":[3],"of":[4,14,54,75,83,157,170,178],"gene":[5,15,191,200],"expression":[6,201],"data":[7,28,45,134,142,150,202],"in":[8,48],"publicly":[9],"accessible":[10],"databases,":[11],"computational":[12],"study":[13],"regulation":[16],"has":[17],"become":[18],"an":[19],"obtainable":[20],"goal":[21],"Intrinsic":[22],"to":[23,91,132,164],"this":[24,38,126,182],"task":[25],"will":[26,184],"be":[27,185],"mining":[29,46],"tools":[30],"for":[31,188],"inferring":[32],"knowledge":[33],"from":[34,95,174,194],"biological":[35],"data.":[36,176],"In":[37,89],"project,":[39],"we":[40,50,97,161],"have":[41,98,124],"developed":[42,99],"a":[43,55,100,118,167],"new":[44,70],"technique":[47,71],"which":[49],"adapt":[51],"connectivity":[53,112],"recurrent":[56],"neural":[57],"network":[58,193],"model":[59,94,172],"by":[60,77],"indexing":[61],"regulatory":[62,87,192],"elements":[63],"and":[64,108,129,146],"including":[65],"nonlinear":[66],"interaction":[67],"terms.":[68],"The":[69],"reduces":[72],"number":[74],"parameters":[76,173],"O(n),":[78],"therefore":[79],"increasing":[80],"chance":[82],"recovering":[84],"underlying":[86],"network.":[88],"order":[90],"fit":[92,120],"data,":[96],"genetic":[101],"fitting":[102,115,127,159],"algorithm":[103,128],"with":[104,143,151],"O(n)":[105],"time":[106],"complexity":[107],"that":[109],"adapts":[110],"during":[113],"process":[116],"until":[117],"satisfactory":[119],"is":[121],"obtained.":[122],"We":[123],"implemented":[125],"applied":[130],"it":[131],"two":[133],"sets:":[135],"rat":[136],"central":[137],"nervous":[138],"system":[139],"development":[140],"(CNS)":[141],"112":[144],"genes,":[145],"yeast":[147],"whole":[148],"genome":[149,198],"2467":[152],"genes.":[153],"multiple":[155],"runs":[156],"algorithm,":[160],"were":[162],"able":[163],"efficiently":[165],"generate":[166],"statistical":[168],"pattern":[169],"Because":[177],"its":[179],"adaptive":[180],"features,":[181],"method":[183],"especially":[186],"useful":[187],"reconstructing":[189],"coarse-grained":[190],"large":[195],"scale":[196,199],"or":[197],"sets.":[203]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
