{"id":"https://openalex.org/W2164431196","doi":"https://doi.org/10.1109/csb.2003.1227339","title":"A semantic mediation approach for problems in computational molecular biology","display_name":"A semantic mediation approach for problems in computational molecular biology","publication_year":2004,"publication_date":"2004-03-30","ids":{"openalex":"https://openalex.org/W2164431196","doi":"https://doi.org/10.1109/csb.2003.1227339","mag":"2164431196"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2003.1227339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227339","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030602787","display_name":"M\u00f3nica Chagoyen","orcid":"https://orcid.org/0000-0001-6911-1591"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. Chagoyen","raw_affiliation_strings":["Biocomputing Unit, Centro Nacional de Biotecnologia, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomputing Unit, Centro Nacional de Biotecnologia, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009909829","display_name":"M.E. Kurul","orcid":null},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.E. Kurul","raw_affiliation_strings":["San Diego Supercomputer Center, University of California, San Diego, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California, San Diego, San Diego, CA, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086577410","display_name":"P.A. De-Alarcon","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P.A. De-Alarcon","raw_affiliation_strings":["Integromics S. L., Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integromics S. L., Madrid, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024949384","display_name":"Simone Santini","orcid":"https://orcid.org/0000-0002-1869-5301"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Santini","raw_affiliation_strings":["University of California San Diego, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057600294","display_name":"Bertram Lud\u00e4scher","orcid":"https://orcid.org/0000-0001-9140-936X"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Ludascher","raw_affiliation_strings":["San Diego Supercomputer Center, University of California, San Diego, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California, San Diego, San Diego, CA, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046960969","display_name":"J.M. Carazo","orcid":"https://orcid.org/0000-0003-0788-8447"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J.M. Carazo","raw_affiliation_strings":["Biocomputing Unit, Centro Nacional de Biotecnologia, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biocomputing Unit, Centro Nacional de Biotecnologia, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057846313","display_name":"Amarnath Gupta","orcid":"https://orcid.org/0000-0003-0897-120X"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Gupta","raw_affiliation_strings":["San Diego Supercomputer Center, University of California, San Diego, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California, San Diego, San Diego, CA, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12130242,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"386","last_page":"387"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6880372762680054},{"id":"https://openalex.org/keywords/planner","display_name":"Planner","score":0.6395694017410278},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.6169723272323608},{"id":"https://openalex.org/keywords/mediation","display_name":"Mediation","score":0.6096058487892151},{"id":"https://openalex.org/keywords/semantic-integration","display_name":"Semantic integration","score":0.48378226161003113},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4785485863685608},{"id":"https://openalex.org/keywords/information-integration","display_name":"Information integration","score":0.44238123297691345},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3980323076248169},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.3529883325099945},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33118778467178345},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24833083152770996},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.24633747339248657},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2314223349094391},{"id":"https://openalex.org/keywords/semantic-computing","display_name":"Semantic computing","score":0.16795876622200012},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1262771189212799},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12453466653823853}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6880372762680054},{"id":"https://openalex.org/C2776999362","wikidata":"https://www.wikidata.org/wiki/Q2349274","display_name":"Planner","level":2,"score":0.6395694017410278},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.6169723272323608},{"id":"https://openalex.org/C179420905","wikidata":"https://www.wikidata.org/wiki/Q223871","display_name":"Mediation","level":2,"score":0.6096058487892151},{"id":"https://openalex.org/C110903229","wikidata":"https://www.wikidata.org/wiki/Q7449064","display_name":"Semantic integration","level":4,"score":0.48378226161003113},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4785485863685608},{"id":"https://openalex.org/C33326189","wikidata":"https://www.wikidata.org/wiki/Q17092450","display_name":"Information integration","level":2,"score":0.44238123297691345},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3980323076248169},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.3529883325099945},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33118778467178345},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24833083152770996},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.24633747339248657},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2314223349094391},{"id":"https://openalex.org/C511149849","wikidata":"https://www.wikidata.org/wiki/Q7449051","display_name":"Semantic computing","level":3,"score":0.16795876622200012},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1262771189212799},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12453466653823853},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2003.1227339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227339","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1600164418","https://openalex.org/W1967408543","https://openalex.org/W2037504378","https://openalex.org/W2080464727","https://openalex.org/W2112343151","https://openalex.org/W2134899277","https://openalex.org/W2141824507","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2130010200","https://openalex.org/W2403209776","https://openalex.org/W2063126111","https://openalex.org/W2091040518","https://openalex.org/W2093125280","https://openalex.org/W2003961240","https://openalex.org/W2381355883","https://openalex.org/W2368731870","https://openalex.org/W2378243565","https://openalex.org/W2551922169"],"abstract_inverted_index":{"As":[0],"great":[1],"amount":[2],"of":[3,40],"data":[4],"are":[5,49],"being":[6],"produced":[7],"and":[8,15,20,46],"accumulated":[9],"in":[10,18,26,57],"life":[11],"sciences,":[12],"information":[13,54],"access":[14],"consequent":[16],"integration":[17,55],"analytical":[19],"computational":[21],"methods":[22],"become":[23],"critical":[24],"issues":[25],"order":[27],"to":[28,51],"conduct":[29],"research.":[30],"In":[31],"this":[32],"work":[33],"we":[34],"describe":[35],"how":[36],"the":[37],"synergic":[38],"combination":[39],"a":[41],"high-level":[42],"programmable":[43],"planner":[44],"engine":[45],"formal":[47],"semantics":[48],"suitable":[50],"resolve":[52],"many":[53],"problems":[56],"molecular":[58],"biology.":[59]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
