{"id":"https://openalex.org/W2132563295","doi":"https://doi.org/10.1109/csb.2003.1227313","title":"Fourier harmonic approach for visualizing temporal patterns of gene expression data","display_name":"Fourier harmonic approach for visualizing temporal patterns of gene expression data","publication_year":2004,"publication_date":"2004-03-30","ids":{"openalex":"https://openalex.org/W2132563295","doi":"https://doi.org/10.1109/csb.2003.1227313","mag":"2132563295","pmid":"https://pubmed.ncbi.nlm.nih.gov/16452788"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2003.1227313","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227313","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100425448","display_name":"Li Zhang","orcid":"https://orcid.org/0000-0001-7914-0679"},"institutions":[{"id":"https://openalex.org/I1327163397","display_name":"State University of New York","ror":"https://ror.org/01q1z8k08","country_code":"US","type":"education","lineage":["https://openalex.org/I1327163397"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"L. Zhang","raw_affiliation_strings":["Department of Computer Science and Engineering, State University of New York, University at Buffalo, Buffalo, NY, USA","Dept. of Comput. Sci. & eng., State Univ. of New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, State University of New York, University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737","https://openalex.org/I57206974"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & eng., State Univ. of New York, USA","institution_ids":["https://openalex.org/I1327163397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064803367","display_name":"Alice Zhang","orcid":"https://orcid.org/0009-0001-4308-9709"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]},{"id":"https://openalex.org/I1327163397","display_name":"State University of New York","ror":"https://ror.org/01q1z8k08","country_code":"US","type":"education","lineage":["https://openalex.org/I1327163397"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Zhang","raw_affiliation_strings":["Department of Computer Science and Engineering, State University of New York, University at Buffalo, Buffalo, NY, USA","Dept. of Comput. Sci. & eng., State Univ. of New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, State University of New York, University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737","https://openalex.org/I57206974"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & eng., State Univ. of New York, USA","institution_ids":["https://openalex.org/I1327163397"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002609733","display_name":"Murali Ramanathan","orcid":"https://orcid.org/0000-0002-9943-150X"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Ramanathan","raw_affiliation_strings":["Department of Pharmaceutical Sciences, State University of New York, University at Buffalo, Buffalo, NY, USA","State Univ. of New York at Buffalo"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, State University of New York, University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737","https://openalex.org/I57206974"]},{"raw_affiliation_string":"State Univ. of New York at Buffalo","institution_ids":["https://openalex.org/I63190737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100425448"],"corresponding_institution_ids":["https://openalex.org/I1327163397","https://openalex.org/I57206974","https://openalex.org/I63190737"],"apc_list":null,"apc_paid":null,"fwci":0.6029,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.65880296,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"283","issue":null,"first_page":"137","last_page":"147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5634809136390686},{"id":"https://openalex.org/keywords/fourier-transform","display_name":"Fourier transform","score":0.5563701391220093},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5223696827888489},{"id":"https://openalex.org/keywords/harmonic","display_name":"Harmonic","score":0.5175230503082275},{"id":"https://openalex.org/keywords/harmonic-analysis","display_name":"Harmonic analysis","score":0.5004873275756836},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4186593294143677},{"id":"https://openalex.org/keywords/fourier-analysis","display_name":"Fourier analysis","score":0.4153304696083069},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3836773931980133},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38233059644699097},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23157557845115662},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.21502476930618286},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20270168781280518},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14833226799964905},{"id":"https://openalex.org/keywords/acoustics","display_name":"Acoustics","score":0.14664021134376526},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.12170574069023132}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5634809136390686},{"id":"https://openalex.org/C102519508","wikidata":"https://www.wikidata.org/wiki/Q6520159","display_name":"Fourier transform","level":2,"score":0.5563701391220093},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5223696827888489},{"id":"https://openalex.org/C127934551","wikidata":"https://www.wikidata.org/wiki/Q1148098","display_name":"Harmonic","level":2,"score":0.5175230503082275},{"id":"https://openalex.org/C131770355","wikidata":"https://www.wikidata.org/wiki/Q876215","display_name":"Harmonic analysis","level":2,"score":0.5004873275756836},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4186593294143677},{"id":"https://openalex.org/C203024314","wikidata":"https://www.wikidata.org/wiki/Q1365258","display_name":"Fourier analysis","level":3,"score":0.4153304696083069},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3836773931980133},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38233059644699097},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23157557845115662},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.21502476930618286},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20270168781280518},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14833226799964905},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.14664021134376526},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.12170574069023132},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1109/csb.2003.1227313","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227313","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},{"id":"pmid:16452788","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16452788","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE Computer Society Bioinformatics Conference","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.104.9194","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.104.9194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://conferences.computer.org/Bioinformatics/CSB2003/PDF/reg_pprs/012-manuscript.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.403.8639","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.403.8639","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ftp.dec.com/pub/toomany/paper76.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.536.1568","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.536.1568","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.buffalo.edu/DBGROUP/bioinformatics/papers/CSB03.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W103269551","https://openalex.org/W113374983","https://openalex.org/W1506891285","https://openalex.org/W1520452425","https://openalex.org/W1587871586","https://openalex.org/W1679913846","https://openalex.org/W1792175597","https://openalex.org/W2015562474","https://openalex.org/W2017018978","https://openalex.org/W2096863518","https://openalex.org/W2108723074","https://openalex.org/W2109643392","https://openalex.org/W2109970232","https://openalex.org/W2113387206","https://openalex.org/W2123237319","https://openalex.org/W2125310307","https://openalex.org/W2134312057","https://openalex.org/W2150926065","https://openalex.org/W2160028522","https://openalex.org/W3023537567","https://openalex.org/W3127325877","https://openalex.org/W3151945894","https://openalex.org/W4213332169","https://openalex.org/W4232576706","https://openalex.org/W4247110399","https://openalex.org/W4388318273","https://openalex.org/W4400093897","https://openalex.org/W6631128086"],"related_works":["https://openalex.org/W4224306892","https://openalex.org/W2587667458","https://openalex.org/W1984031140","https://openalex.org/W2034082304","https://openalex.org/W81470468","https://openalex.org/W1861882962","https://openalex.org/W2164070943","https://openalex.org/W2163128389","https://openalex.org/W2121926536","https://openalex.org/W1964268922"],"abstract_inverted_index":{"DNA":[0],"microarray":[1],"technology":[2],"provides":[3],"a":[4,36,44,76,98],"broad":[5],"snapshot":[6],"of":[7,10,18,20,31,57,71,106,112,140],"the":[8,11,15,27,41,49,68,92,107,110,113,138,141],"state":[9],"cell":[12],"by":[13,39],"measuring":[14],"expression":[16,73,133],"levels":[17],"thousands":[19],"genes":[21],"simultaneously.":[22],"Visualization":[23],"techniques":[24],"can":[25],"enable":[26],"exploration":[28],"and":[29,33,116],"detection":[30],"patterns":[32,70],"relationships":[34,117],"in":[35,43,47,75],"complex":[37],"dataset":[38,115],"presenting":[40],"data":[42,74,96],"graphical":[45],"format":[46],"which":[48],"key":[50],"characteristics":[51],"become":[52,120],"more":[53],"apparent.":[54],"The":[55,82,103,123],"purpose":[56],"this":[58],"study":[59],"is":[60],"to":[61,90],"present":[62],"an":[63],"interactive":[64],"visualization":[65],"technique":[66],"conveying":[67],"temporal":[69],"gene":[72,132],"form":[77],"intuitive":[78],"for":[79],"non-specialized":[80],"end-users.":[81],"first":[83],"Fourier":[84],"harmonic":[85],"projection":[86],"(FFHP)":[87],"was":[88,126],"introduced":[89],"translate":[91],"multi-dimensional":[93],"time":[94],"series":[95],"into":[97],"two":[99,121,129],"dimensional":[100],"scatter":[101],"plot.":[102],"spatial":[104],"relationship":[105],"points":[108],"reflect":[109],"structure":[111],"original":[114],"among":[118],"clusters":[119],"dimensional.":[122],"proposed":[124],"method":[125],"tested":[127],"using":[128],"published,":[130],"array-derived":[131],"datasets.":[134],"Our":[135],"results":[136],"demonstrate":[137],"effectiveness":[139],"approach.":[142]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
