{"id":"https://openalex.org/W2049238879","doi":"https://doi.org/10.1109/conielecomp.2011.5749379","title":"Acceleration of biological algorithms using reconfigurable logic","display_name":"Acceleration of biological algorithms using reconfigurable logic","publication_year":2011,"publication_date":"2011-02-01","ids":{"openalex":"https://openalex.org/W2049238879","doi":"https://doi.org/10.1109/conielecomp.2011.5749379","mag":"2049238879"},"language":"en","primary_location":{"id":"doi:10.1109/conielecomp.2011.5749379","is_oa":false,"landing_page_url":"https://doi.org/10.1109/conielecomp.2011.5749379","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CONIELECOMP 2011, 21st International Conference on Electrical Communications and Computers","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073977063","display_name":"Mario Alberto Garc\u00eda-Mart\u00ednez","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165121","display_name":"Instituto Tecnologico de Orizaba","ror":"https://ror.org/05vpj2s72","country_code":"MX","type":"education","lineage":["https://openalex.org/I4210165121"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Mario Alberto Garcia-Martinez","raw_affiliation_strings":["Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]},{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020293435","display_name":"Rub\u00e9n Posada\u2010G\u00f3mez","orcid":"https://orcid.org/0000-0001-9325-7988"},"institutions":[{"id":"https://openalex.org/I4210165121","display_name":"Instituto Tecnologico de Orizaba","ror":"https://ror.org/05vpj2s72","country_code":"MX","type":"education","lineage":["https://openalex.org/I4210165121"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Ruben Posada-Gomez","raw_affiliation_strings":["Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]},{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079357841","display_name":"German Lopez-Andrade","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165121","display_name":"Instituto Tecnologico de Orizaba","ror":"https://ror.org/05vpj2s72","country_code":"MX","type":"education","lineage":["https://openalex.org/I4210165121"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"German Lopez-Andrade","raw_affiliation_strings":["Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]},{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090348702","display_name":"Giner Alor\u2010Hern\u00e1ndez","orcid":"https://orcid.org/0000-0003-3296-0981"},"institutions":[{"id":"https://openalex.org/I4210165121","display_name":"Instituto Tecnologico de Orizaba","ror":"https://ror.org/05vpj2s72","country_code":"MX","type":"education","lineage":["https://openalex.org/I4210165121"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Giner Alor-Hernandez","raw_affiliation_strings":["Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Orizaba, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]},{"raw_affiliation_string":"Departamento de Postgrado e Investigaci\u00f3n, Instituto Tecnol\u00f3gico de Orizaba, Av. Ote. 6 No 852, Col. Emiliano Zapata, Veracruz, M\u00e9xico","institution_ids":["https://openalex.org/I4210165121"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5073977063"],"corresponding_institution_ids":["https://openalex.org/I4210165121"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09700178,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"12","issue":null,"first_page":"113","last_page":"118"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.8566696643829346},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6772814393043518},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3905768394470215},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07387545704841614}],"concepts":[{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.8566696643829346},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6772814393043518},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3905768394470215},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07387545704841614},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/conielecomp.2011.5749379","is_oa":false,"landing_page_url":"https://doi.org/10.1109/conielecomp.2011.5749379","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CONIELECOMP 2011, 21st International Conference on Electrical Communications and Computers","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5299999713897705}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1482722110","https://openalex.org/W1501400124","https://openalex.org/W1584190736","https://openalex.org/W2016190417","https://openalex.org/W2060151352","https://openalex.org/W2110159903","https://openalex.org/W2116015664","https://openalex.org/W2122048245","https://openalex.org/W2137709353","https://openalex.org/W2153828440","https://openalex.org/W2167060712","https://openalex.org/W2167902870","https://openalex.org/W2171273258","https://openalex.org/W2986607873","https://openalex.org/W4239759919"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Efficiency":[0],"in":[1,15,25,89],"processing":[2],"algorithms":[3],"of":[4,10,27,36,44,77,95],"biological":[5],"systems":[6],"is":[7,58],"actually":[8],"one":[9],"the":[11,19,22,34,74,84,91],"most":[12],"relevant":[13],"areas":[14],"computational":[16],"biology.":[17],"On":[18],"other":[20],"hand,":[21],"technological":[23],"advances":[24],"development":[26],"reconfigurable":[28],"devices":[29],"as":[30,48],"FPGAs,":[31],"offers":[32],"today":[33],"possibility":[35],"designing":[37],"really":[38],"efficient":[39],"implementations,":[40],"which":[41,87],"takes":[42],"advantages":[43],"their":[45],"particular":[46],"characteristics":[47],"high":[49,51],"speed,":[50],"integration":[52],"density":[53],"and":[54,79],"rescheduling":[55],"facility.":[56],"It":[57],"well-known":[59],"that":[60,82],"a":[61],"hardware":[62],"implementation":[63,76],"has":[64],"better":[65],"time":[66],"efficiency":[67],"than":[68],"software":[69],"development.":[70],"This":[71],"paper":[72],"presents":[73],"FPGA":[75],"Sankoff":[78],"Kruskal":[80],"Algorithm":[81],"solves":[83],"\u201cRNA":[85],"problem\u201d,":[86],"consists":[88],"searching":[90],"secondary":[92],"ideal":[93],"structure":[94],"RNA's":[96],"chain.":[97]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
