{"id":"https://openalex.org/W2118185146","doi":"https://doi.org/10.1109/compsac.2006.18","title":"Accomplishments and Challenges of Protein Ontology","display_name":"Accomplishments and Challenges of Protein Ontology","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2118185146","doi":"https://doi.org/10.1109/compsac.2006.18","mag":"2118185146"},"language":"en","primary_location":{"id":"doi:10.1109/compsac.2006.18","is_oa":false,"landing_page_url":"https://doi.org/10.1109/compsac.2006.18","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"30th Annual International Computer Software and Applications Conference (COMPSAC'06)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://espace.curtin.edu.au/bitstream/20.500.11937/13261/2/116497_Accomplishments%2520and%2520Challenges%2520PID%2520116497.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057674473","display_name":"Amandeep S. Sidhu","orcid":"https://orcid.org/0000-0001-8231-9821"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]},{"id":"https://openalex.org/I205640436","display_name":"Curtin University","ror":"https://ror.org/02n415q13","country_code":"AU","type":"education","lineage":["https://openalex.org/I205640436"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Amandeep Sidhu","raw_affiliation_strings":["Fac. of Inf. Technol., Technol. Sydney Univ., NSW","School of Information Systems, Curtin University of Technology, Perth, Australia"],"affiliations":[{"raw_affiliation_string":"Fac. of Inf. Technol., Technol. Sydney Univ., NSW","institution_ids":["https://openalex.org/I114017466"]},{"raw_affiliation_string":"School of Information Systems, Curtin University of Technology, Perth, Australia","institution_ids":["https://openalex.org/I205640436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049421085","display_name":"Tharam S. Dillon","orcid":"https://orcid.org/0000-0002-7527-129X"},"institutions":[{"id":"https://openalex.org/I205640436","display_name":"Curtin University","ror":"https://ror.org/02n415q13","country_code":"AU","type":"education","lineage":["https://openalex.org/I205640436"]},{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tharam Dillon","raw_affiliation_strings":["Fac. of Inf. Technol., Technol. Sydney Univ., NSW","School of Information Systems, Curtin University of Technology, Perth, Australia"],"affiliations":[{"raw_affiliation_string":"Fac. of Inf. Technol., Technol. Sydney Univ., NSW","institution_ids":["https://openalex.org/I114017466"]},{"raw_affiliation_string":"School of Information Systems, Curtin University of Technology, Perth, Australia","institution_ids":["https://openalex.org/I205640436"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038388008","display_name":"Farookh Hussain","orcid":null},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]},{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Farookh Hussain","raw_affiliation_strings":["Faculty of Information Technology, Sydney University of Technology, Australia","Faculty of Information Technology, University of Technology, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Sydney University of Technology, Australia","institution_ids":["https://openalex.org/I114017466","https://openalex.org/I129604602"]},{"raw_affiliation_string":"Faculty of Information Technology, University of Technology, Sydney, Australia","institution_ids":["https://openalex.org/I114017466"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5057674473"],"corresponding_institution_ids":["https://openalex.org/I114017466","https://openalex.org/I205640436"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12951154,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"71","last_page":"76"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7566758394241333},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7286845445632935},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.6552586555480957},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5854488611221313},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5270540714263916},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.5177851915359497},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.4695069491863251},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.42283836007118225},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38364267349243164},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37581026554107666},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.21361368894577026},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.19028353691101074}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7566758394241333},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7286845445632935},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.6552586555480957},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5854488611221313},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5270540714263916},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.5177851915359497},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.4695069491863251},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.42283836007118225},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38364267349243164},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37581026554107666},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.21361368894577026},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.19028353691101074},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/compsac.2006.18","is_oa":false,"landing_page_url":"https://doi.org/10.1109/compsac.2006.18","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"30th Annual International Computer Software and Applications Conference (COMPSAC'06)","raw_type":"proceedings-article"},{"id":"pmh:oai:espace.curtin.edu.au:20.500.11937/13261","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11937/13261","pdf_url":"https://espace.curtin.edu.au/bitstream/20.500.11937/13261/2/116497_Accomplishments%2520and%2520Challenges%2520PID%2520116497.pdf","source":{"id":"https://openalex.org/S4306401790","display_name":"eSpace (Curtin University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205640436","host_organization_name":"Curtin University","host_organization_lineage":["https://openalex.org/I205640436"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"}],"best_oa_location":{"id":"pmh:oai:espace.curtin.edu.au:20.500.11937/13261","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11937/13261","pdf_url":"https://espace.curtin.edu.au/bitstream/20.500.11937/13261/2/116497_Accomplishments%2520and%2520Challenges%2520PID%2520116497.pdf","source":{"id":"https://openalex.org/S4306401790","display_name":"eSpace (Curtin University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205640436","host_organization_name":"Curtin University","host_organization_lineage":["https://openalex.org/I205640436"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118185146.pdf","grobid_xml":"https://content.openalex.org/works/W2118185146.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W198862927","https://openalex.org/W1501210482","https://openalex.org/W1571452908","https://openalex.org/W2103017472","https://openalex.org/W2140900696","https://openalex.org/W2147809382","https://openalex.org/W2148853951","https://openalex.org/W2150306348","https://openalex.org/W2150556577","https://openalex.org/W2170408907","https://openalex.org/W2171187485"],"related_works":["https://openalex.org/W2284058717","https://openalex.org/W2159818280","https://openalex.org/W2374991871","https://openalex.org/W2114954739","https://openalex.org/W1794266373","https://openalex.org/W2889792096","https://openalex.org/W1506177826","https://openalex.org/W1830516355","https://openalex.org/W2158851296","https://openalex.org/W176267515"],"abstract_inverted_index":{"Recent":[0],"progress":[1],"in":[2,114,119,161],"proteomics,":[3],"computational":[4],"biology,":[5],"and":[6,30,40,70,72,123,130,149],"ontology":[7],"development":[8,136],"has":[9],"presented":[10],"an":[11],"opportunity":[12],"to":[13,57,90],"investigate":[14],"protein":[15,25,47,67,98,112],"data":[16,26,37,48,68,80,99,113,121,124],"sources":[17,27],"from":[18],"a":[19,96,108,115,139,171],"unique":[20],"perspective":[21],"that":[22,55,117],"is,":[23],"examining":[24],"through":[28],"structure":[29],"hierarchy":[31],"of":[32,137,151,155,169],"Protein":[33,86,102,105,128],"Ontology":[34,87,106],"(PO).":[35],"Various":[36],"mining":[38,125],"algorithms":[39],"mathematical":[41],"models":[42,126],"provide":[43],"methods":[44],"for":[45,63,65,83,101,110,127],"analyzing":[46],"sources;":[49],"however,":[50],"there":[51],"are":[52],"two":[53],"issues":[54],"need":[56,62],"be":[58],"addressed:":[59],"(1)":[60],"the":[61,79],"standards":[64],"defining":[66,120],"description":[69],"exchange":[71],"(2)":[73],"eliminating":[74],"errors":[75],"which":[76],"arise":[77],"with":[78],"integration":[81,122],"methodologies":[82],"complex":[84],"queries.":[85],"is":[88,107],"designed":[89],"meet":[91],"these":[92],"needs":[93],"by":[94],"providing":[95],"structured":[97],"specification":[100],"Data":[103,154],"Representation.":[104],"standard":[109],"representing":[111],"way":[116],"helps":[118],"Structure":[129],"Function.":[131],"We":[132,158],"report":[133],"here":[134],"our":[135,166],"PO;":[138],"semantic":[140],"heterogeneity":[141],"framework":[142,173],"based":[143],"on":[144],"relationships":[145],"between":[146],"PO":[147,153],"concepts;":[148],"analysis":[150],"resultant":[152],"Human":[156],"Proteins.":[157],"also":[159],"talk":[160],"this":[162],"paper":[163],"briefly":[164],"about":[165],"ongoing":[167],"work":[168],"designing":[170],"trustworthy":[172],"around":[174],"PO.":[175]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
