{"id":"https://openalex.org/W2110062954","doi":"https://doi.org/10.1109/coginf.2005.1532615","title":"Topological-based classification using artificial gene networks","display_name":"Topological-based classification using artificial gene networks","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2110062954","doi":"https://doi.org/10.1109/coginf.2005.1532615","mag":"2110062954"},"language":"en","primary_location":{"id":"doi:10.1109/coginf.2005.1532615","is_oa":false,"landing_page_url":"https://doi.org/10.1109/coginf.2005.1532615","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fourth IEEE Conference on Cognitive Informatics, 2005. (ICCI 2005).","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030773606","display_name":"Chun-Chi Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I162838928","display_name":"National Chung Hsing University","ror":"https://ror.org/05vn3ca78","country_code":"TW","type":"education","lineage":["https://openalex.org/I162838928"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Chun-Chi Liu","raw_affiliation_strings":["Department of Computer Science, National Chung Hsing University, Taichung, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Chung Hsing University, Taichung, Taiwan","institution_ids":["https://openalex.org/I162838928"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062432149","display_name":"W.-S.E. Chen","orcid":"https://orcid.org/0000-0003-0992-8895"},"institutions":[{"id":"https://openalex.org/I162838928","display_name":"National Chung Hsing University","ror":"https://ror.org/05vn3ca78","country_code":"TW","type":"education","lineage":["https://openalex.org/I162838928"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"W.-S.E. Chen","raw_affiliation_strings":["Department of Computer Science, National Chung Hsing University, Taichung, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Chung Hsing University, Taichung, Taiwan","institution_ids":["https://openalex.org/I162838928"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102823857","display_name":"Pei-Chun Chang","orcid":"https://orcid.org/0000-0002-8771-801X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pei-Chun Chang","raw_affiliation_strings":["Institutes of Bioinformatics, Taichung Healthcare and Management University, Taichung, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institutes of Bioinformatics, Taichung Healthcare and Management University, Taichung, Taiwan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054716842","display_name":"Jeremy J.W. Chen","orcid":"https://orcid.org/0000-0003-1049-3825"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I162838928","display_name":"National Chung Hsing University","ror":"https://ror.org/05vn3ca78","country_code":"TW","type":"education","lineage":["https://openalex.org/I162838928"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"J.J.W. Chen","raw_affiliation_strings":["Institutes of Biomedical Sciences and Molecular Biology, National Chung Hsing University, Taichung, Taiwan","NTU Center for Genomic Medicine, National Taiwan University College of Medicine, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institutes of Biomedical Sciences and Molecular Biology, National Chung Hsing University, Taichung, Taiwan","institution_ids":["https://openalex.org/I162838928"]},{"raw_affiliation_string":"NTU Center for Genomic Medicine, National Taiwan University College of Medicine, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030773606"],"corresponding_institution_ids":["https://openalex.org/I162838928"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11653261,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"286","issue":null,"first_page":"49","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6070495843887329},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.5414550304412842},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5393670797348022},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5194363594055176},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.48048630356788635},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4745163321495056},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.4679471552371979},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.45222336053848267},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.325836181640625},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2744637727737427}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6070495843887329},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.5414550304412842},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5393670797348022},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5194363594055176},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.48048630356788635},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4745163321495056},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.4679471552371979},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.45222336053848267},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.325836181640625},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2744637727737427},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/coginf.2005.1532615","is_oa":false,"landing_page_url":"https://doi.org/10.1109/coginf.2005.1532615","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fourth IEEE Conference on Cognitive Informatics, 2005. (ICCI 2005).","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.331.9570","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.331.9570","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.nchu.edu.tw/~add/budget/student abroad/inter-meeting-94/T94-3-13.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1504974927","https://openalex.org/W1528914253","https://openalex.org/W1663732827","https://openalex.org/W1966701961","https://openalex.org/W1992452843","https://openalex.org/W2010320710","https://openalex.org/W2018045523","https://openalex.org/W2038929732","https://openalex.org/W2044337456","https://openalex.org/W2067245109","https://openalex.org/W2095387858","https://openalex.org/W2097687901","https://openalex.org/W2099841076","https://openalex.org/W2101927907","https://openalex.org/W2109363337","https://openalex.org/W2112090702","https://openalex.org/W2118446779","https://openalex.org/W2127544153","https://openalex.org/W2129556265","https://openalex.org/W2130790725","https://openalex.org/W2133425690","https://openalex.org/W2136931666","https://openalex.org/W2137476312","https://openalex.org/W2140948740","https://openalex.org/W2142720308","https://openalex.org/W2143426320","https://openalex.org/W2155497595","https://openalex.org/W2157485001","https://openalex.org/W2157875785","https://openalex.org/W2162815897","https://openalex.org/W2165823492","https://openalex.org/W2168561598","https://openalex.org/W2611104316","https://openalex.org/W4244934246","https://openalex.org/W6630073168","https://openalex.org/W6660138424","https://openalex.org/W6679868549","https://openalex.org/W6683776659"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W4388145910","https://openalex.org/W4387465941","https://openalex.org/W4387327236","https://openalex.org/W2183488467","https://openalex.org/W1990237101","https://openalex.org/W4309907966","https://openalex.org/W4387896287","https://openalex.org/W2187490799","https://openalex.org/W3170838353"],"abstract_inverted_index":{"The":[0],"topological":[1,30,136],"properties":[2,31],"of":[3,12,18,32,81,96,118,124,135,169,180],"artificial":[4,102,141],"gene":[5,19,61,89,103,142],"networks":[6,104,143],"that":[7,75],"rely":[8],"on":[9],"the":[10,15,33,66,87,112,115,125,133,139,145,155,161,167,170,183],"assessment":[11],"similarities":[13],"between":[14,138],"expressions":[16],"profile":[17],"pairs":[20],"would":[21,35],"be":[22],"consistent":[23],"with":[24,70],"specific":[25],"cellular":[26,41],"states.":[27,42],"Furthermore,":[28],"some":[29],"network":[34],"have":[36],"significant":[37],"variance":[38],"regarding":[39],"different":[40],"In":[43],"this":[44,71],"study,":[45],"we":[46,73,110,174,188],"proposed":[47],"a":[48,56,78,177],"novel":[49],"and":[50,121,144],"highly":[51],"efficient":[52],"computational":[53],"framework":[54],"for":[55],"topological-based":[57,83],"classification":[58,149],"using":[59,82],"microarray":[60,88],"expression":[62,90],"data.":[63],"Owing":[64],"to":[65,98,132,196],"high":[67],"prediction":[68,178,192],"accuracy":[69,150,179,193],"approach,":[72],"believe":[74],"there":[76],"is":[77],"noticeable":[79],"advantage":[80],"classification.":[84],"We":[85],"used":[86],"data":[91,116,157,163,172,185],"sets":[92],"containing":[93],"14":[94,100],"classes":[95],"cancer":[97],"construct":[99],"basic":[101,140],"accordingly.":[105],"For":[106],"each":[107,119],"test":[108,156,184],"sample,":[109],"add":[111],"sample":[113],"into":[114],"set":[117,158],"class":[120],"reconstruct":[122],"all":[123],"networks.":[126,147],"Cancer":[127],"type":[128],"was":[129],"classified":[130],"according":[131],"correlation":[134],"quantity":[137],"reconstructed":[146],"Total":[148],"can":[151,175,189],"achieve":[152,176,190],"78.26%":[153],"in":[154,160,182,194],"(95.83%":[159],"standard":[162,171],"set).":[164],"After":[165],"screening":[166],"quality":[168],"set,":[173],"86.48%":[181],"set.":[186],"Thus,":[187],"higher":[191],"comparison":[195],"previous":[197],"studies.":[198]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}