{"id":"https://openalex.org/W4283723149","doi":"https://doi.org/10.1109/codit55151.2022.9804139","title":"Using Graph Databases for Portraying and Analysing Biological and Biomedical Networks","display_name":"Using Graph Databases for Portraying and Analysing Biological and Biomedical Networks","publication_year":2022,"publication_date":"2022-05-17","ids":{"openalex":"https://openalex.org/W4283723149","doi":"https://doi.org/10.1109/codit55151.2022.9804139"},"language":"en","primary_location":{"id":"doi:10.1109/codit55151.2022.9804139","is_oa":false,"landing_page_url":"https://doi.org/10.1109/codit55151.2022.9804139","pdf_url":null,"source":{"id":"https://openalex.org/S4363607900","display_name":"2022 8th International Conference on Control, Decision and Information Technologies (CoDIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 8th International Conference on Control, Decision and Information Technologies (CoDIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040661461","display_name":"Blagoj Ristevski","orcid":"https://orcid.org/0000-0002-8356-1203"},"institutions":[{"id":"https://openalex.org/I2802401942","display_name":"University \"St. Kliment Ohridski\" - Bitola","ror":"https://ror.org/04161ta68","country_code":"MK","type":"education","lineage":["https://openalex.org/I2802401942"]}],"countries":["MK"],"is_corresponding":false,"raw_author_name":"Blagoj Ristevski","raw_affiliation_strings":["University &#x201C;St. Kliment Ohridski&#x201D;- Bitola,Faculty of Information and Communication Technologies - Bitola,Bitola,Republic of Macedonia"],"raw_orcid":"https://orcid.org/0000-0002-8356-1203","affiliations":[{"raw_affiliation_string":"University &#x201C;St. Kliment Ohridski&#x201D;- Bitola,Faculty of Information and Communication Technologies - Bitola,Bitola,Republic of Macedonia","institution_ids":["https://openalex.org/I2802401942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002853191","display_name":"Snezana Savoska","orcid":"https://orcid.org/0000-0002-0539-1771"},"institutions":[{"id":"https://openalex.org/I2802401942","display_name":"University \"St. Kliment Ohridski\" - Bitola","ror":"https://ror.org/04161ta68","country_code":"MK","type":"education","lineage":["https://openalex.org/I2802401942"]}],"countries":["MK"],"is_corresponding":false,"raw_author_name":"Snezana Savoska","raw_affiliation_strings":["University &#x201C;St. Kliment Ohridski&#x201D;- Bitola,Faculty of Information and Communication Technologies - Bitola,Bitola,Republic of Macedonia"],"raw_orcid":"https://orcid.org/0000-0002-0539-1771","affiliations":[{"raw_affiliation_string":"University &#x201C;St. Kliment Ohridski&#x201D;- Bitola,Faculty of Information and Communication Technologies - Bitola,Bitola,Republic of Macedonia","institution_ids":["https://openalex.org/I2802401942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064477217","display_name":"Zlatko Savoski","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101590","display_name":"Smile Train","ror":"https://ror.org/00x94td80","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210101590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zlatko Savoski","raw_affiliation_strings":["Borka Taleski General Hospital,Internal department Prilep,Prilep,Republic of Macedonia","Internal department Prilep, Borka Taleski General Hospital, Prilep, Republic of Macedonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Borka Taleski General Hospital,Internal department Prilep,Prilep,Republic of Macedonia","institution_ids":["https://openalex.org/I4210101590"]},{"raw_affiliation_string":"Internal department Prilep, Borka Taleski General Hospital, Prilep, Republic of Macedonia","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09756098,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2020","issue":null,"first_page":"565","last_page":"568"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nosql","display_name":"NoSQL","score":0.9439723491668701},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.7344306707382202},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7261666059494019},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.7204385995864868},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.700757622718811},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.6818666458129883},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5412335991859436},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.5162520408630371},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.46888893842697144},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.46572253108024597},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4219411611557007},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4146178364753723},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2550790011882782},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.17555642127990723},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13050612807273865},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09060004353523254}],"concepts":[{"id":"https://openalex.org/C2779599972","wikidata":"https://www.wikidata.org/wiki/Q82231","display_name":"NoSQL","level":3,"score":0.9439723491668701},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.7344306707382202},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7261666059494019},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.7204385995864868},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.700757622718811},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.6818666458129883},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5412335991859436},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.5162520408630371},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.46888893842697144},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.46572253108024597},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4219411611557007},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4146178364753723},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2550790011882782},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.17555642127990723},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13050612807273865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09060004353523254}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/codit55151.2022.9804139","is_oa":false,"landing_page_url":"https://doi.org/10.1109/codit55151.2022.9804139","pdf_url":null,"source":{"id":"https://openalex.org/S4363607900","display_name":"2022 8th International Conference on Control, Decision and Information Technologies (CoDIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 8th International Conference on Control, Decision and Information Technologies (CoDIT)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W2108103746","https://openalex.org/W2288713920","https://openalex.org/W2320656788","https://openalex.org/W2464096734","https://openalex.org/W2496792076","https://openalex.org/W2774251500","https://openalex.org/W2944141861","https://openalex.org/W2975945506","https://openalex.org/W2981683190","https://openalex.org/W3006690491","https://openalex.org/W3011505309","https://openalex.org/W3011857543","https://openalex.org/W3017034294","https://openalex.org/W3037188156","https://openalex.org/W3082150690","https://openalex.org/W3086843735","https://openalex.org/W3136959863","https://openalex.org/W4287801413","https://openalex.org/W6774932254","https://openalex.org/W6776739146","https://openalex.org/W6782584573"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W2120890012","https://openalex.org/W4283723149","https://openalex.org/W2286239702","https://openalex.org/W782572168","https://openalex.org/W2605630948","https://openalex.org/W1982109448","https://openalex.org/W47355381","https://openalex.org/W2167702390"],"abstract_inverted_index":{"Nowadays,":[0],"huge":[1],"amounts":[2],"of":[3,27,77,169,176],"data":[4,31,78,81,132],"are":[5,36,58,113,118,172],"generated":[6],"experimentally":[7],"in":[8,13,24,49,103,105,135,145,181,203],"systems":[9],"biology":[10],"as":[11,195,206,208],"well":[12,207],"clinics":[14],"and":[15,18,32,40,54,65,71,80,93,108,123,142,147,155,158,160,167,198],"other":[16,143],"healthcare":[17],"medical":[19],"institutions.":[20],"This":[21,137],"has":[22],"resulted":[23],"the":[25,75,140,149,164,177,187,191],"emergence":[26],"new":[28],"concepts:":[29],"big":[30],"NoSQL":[33,83],"databases":[34,84,89,112,117,154],"that":[35,47,133,201],"becoming":[37],"more":[38],"popular":[39],"promising":[41],"especially":[42,128],"for":[43,90,129,190],"analyzing":[44,166],"complex":[45,99],"interactions":[46,197],"exist":[48,134],"biological":[50,141,170,178,192,204],"networks.":[51],"These":[52,116],"heterogeneous":[53],"voluminous":[55],"data,":[56,127],"which":[57],"usually":[59],"semi-structured":[60],"or":[61],"unstructured,":[62],"highly":[63],"connected":[64],"unpredictable,":[66],"need":[67],"to":[68,96,120],"be":[69],"integrated":[70],"stored":[72],"properly.":[73],"With":[74],"growth":[76],"size":[79],"complexity,":[82],"have":[85],"outperformed":[86],"traditional":[87],"relational":[88],"analysis,":[91],"access":[92],"querying.":[94],"Particularly,":[95],"represent":[97],"various":[98],"relationships":[100],"among":[101],"entities":[102],"physics,":[104],"biological,":[106],"social":[107],"computer":[109],"networks,":[110,205],"graph-based":[111],"very":[114,183],"suitable.":[115],"appropriate":[119],"represent,":[121],"store":[122],"query":[124],"heavily":[125],"interconnected":[126],"large-scale":[130],"network":[131],"biology.":[136],"paper":[138],"describes":[139],"networks":[144,171,179],"biomedicine":[146],"surveys":[148],"most":[150],"widely":[151],"used":[152],"graph":[153],"software":[156],"tools":[157],"packages":[159],"their":[161,210],"properties.":[162,211],"Additionally,":[163],"portraying,":[165],"querying":[168],"described.":[173],"The":[174],"analysis":[175],"results":[180],"gaining":[182],"significant":[184],"insights":[185],"into":[186],"relevant":[188],"information":[189],"processes,":[193],"such":[194],"diseases,":[196],"regulatory":[199],"mechanisms":[200],"occur":[202],"studying":[209]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
