{"id":"https://openalex.org/W2124851157","doi":"https://doi.org/10.1109/clade.2005.1520902","title":"Challenges in large scale distributed computing: bioinformatics","display_name":"Challenges in large scale distributed computing: bioinformatics","publication_year":2005,"publication_date":"2005-10-24","ids":{"openalex":"https://openalex.org/W2124851157","doi":"https://doi.org/10.1109/clade.2005.1520902","mag":"2124851157"},"language":"en","primary_location":{"id":"doi:10.1109/clade.2005.1520902","is_oa":false,"landing_page_url":"https://doi.org/10.1109/clade.2005.1520902","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CLADE 2005. Proceedings Challenges of Large Applications in Distributed Environments, 2005.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111540751","display_name":"T. Disz","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T. Disz","raw_affiliation_strings":["Argonne National Laboratory, University of Chicago, USA","Argonne Nat. Lab., Chicago Univ., IL, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, University of Chicago, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne Nat. Lab., Chicago Univ., IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006377909","display_name":"Michael Kubal","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Kubal","raw_affiliation_strings":["Argonne National Laboratory, University of Chicago, USA","Argonne Nat. Lab., Chicago Univ., IL, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, University of Chicago, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne Nat. Lab., Chicago Univ., IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015210172","display_name":"Robert Olson","orcid":"https://orcid.org/0000-0001-9751-4734"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Olson","raw_affiliation_strings":["Argonne National Laboratory, University of Chicago, USA","Argonne Nat. Lab., Chicago Univ., IL, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, University of Chicago, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne Nat. Lab., Chicago Univ., IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085138988","display_name":"Ross Overbeek","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Overbeek","raw_affiliation_strings":["Argonne National Laboratory, University of Chicago, USA","Argonne Nat. Lab., Chicago Univ., IL, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, University of Chicago, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne Nat. Lab., Chicago Univ., IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053682943","display_name":"Rick Stevens","orcid":"https://orcid.org/0000-0002-4268-4020"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Stevens","raw_affiliation_strings":["Argonne National Laboratory, University of Chicago, USA","Argonne Nat. Lab., Chicago Univ., IL, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, University of Chicago, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne Nat. Lab., Chicago Univ., IL, USA","institution_ids":["https://openalex.org/I1282105669"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5111540751"],"corresponding_institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.11939134,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"57","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8181289434432983},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.7802989482879639},{"id":"https://openalex.org/keywords/parallelism","display_name":"Parallelism (grammar)","score":0.6301280856132507},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5354623198509216},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5198919773101807},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5170038938522339},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5100110769271851},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.48848283290863037},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.4584408104419708},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.14143168926239014}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8181289434432983},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.7802989482879639},{"id":"https://openalex.org/C2781172179","wikidata":"https://www.wikidata.org/wiki/Q853109","display_name":"Parallelism (grammar)","level":2,"score":0.6301280856132507},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5354623198509216},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5198919773101807},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5170038938522339},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5100110769271851},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.48848283290863037},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4584408104419708},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.14143168926239014},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/clade.2005.1520902","is_oa":false,"landing_page_url":"https://doi.org/10.1109/clade.2005.1520902","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CLADE 2005. Proceedings Challenges of Large Applications in Distributed Environments, 2005.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.149.2409","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.149.2409","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.mcs.anl.gov/uploads/cels/papers/P1238.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.379.7643","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.379.7643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://info.mcs.anl.gov/pub/tech_reports/reports/P1238.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1537293292","https://openalex.org/W1582212884","https://openalex.org/W1587558271","https://openalex.org/W1968726730","https://openalex.org/W1978160059","https://openalex.org/W1995117714","https://openalex.org/W2017727500","https://openalex.org/W2039665204","https://openalex.org/W2042938763","https://openalex.org/W2055043387","https://openalex.org/W2062693912","https://openalex.org/W2070611672","https://openalex.org/W2079048673","https://openalex.org/W2126016150","https://openalex.org/W2130479394","https://openalex.org/W2131410522","https://openalex.org/W2138688367","https://openalex.org/W2158714788","https://openalex.org/W2995034285","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2384867379","https://openalex.org/W4400094300","https://openalex.org/W2329539859","https://openalex.org/W2227905990","https://openalex.org/W2765823764","https://openalex.org/W3214280620","https://openalex.org/W1599154403","https://openalex.org/W1603364509","https://openalex.org/W1595672120","https://openalex.org/W4230999561"],"abstract_inverted_index":{"The":[0,40,102],"amount":[1],"of":[2,16,21,37,43,61,93,118,126,131,145],"genomic":[3],"data":[4,22,103,133],"available":[5],"for":[6,33,104],"study":[7],"is":[8,23,52],"increasing":[9],"at":[10],"a":[11,99],"rate":[12],"similar":[13],"to":[14,26,56,84,96],"that":[15,81],"Moore's":[17],"law.":[18],"This":[19],"deluge":[20],"challenging":[24,53],"bioinformaticians":[25],"develop":[27,57],"newer,":[28],"faster":[29,59],"and":[30,35,68,88,110,124,134,136,148],"better":[31],"algorithms":[32],"analysis":[34],"examination":[36],"this":[38,75],"data.":[39],"growing":[41],"availability":[42],"large":[44,91,109],"scale":[45],"computing":[46,72,94],"grids":[47],"coupled":[48],"with":[49],"high-performance":[50],"networking":[51],"computer":[54],"scientists":[55],"better,":[58],"methods":[60],"exploiting":[62],"parallelism":[63,135],"in":[64,98,152],"these":[65,105,127,150],"biological":[66],"computations":[67,80,106,151],"deploying":[69],"them":[70],"across":[71],"grids.":[73],"In":[74],"paper,":[76],"we":[77,137,140],"describe":[78],"two":[79],"are":[82,107,141],"required":[83],"be":[85],"run":[86],"frequently":[87],"which":[89],"require":[90],"amounts":[92],"resource":[95],"complete":[97],"reasonable":[100],"time.":[101],"very":[108],"the":[111,122,129,132,143,153],"sequential":[112],"computational":[113],"time":[114],"can":[115],"exceed":[116],"thousands":[117],"hours.":[119],"We":[120],"show":[121,138],"importance":[123],"relevance":[125],"computations,":[128],"nature":[130],"how":[139],"meeting":[142],"challenge":[144],"efficiently":[146],"distributing":[147],"managing":[149],"SEED":[154],"project.":[155]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
