{"id":"https://openalex.org/W2125014646","doi":"https://doi.org/10.1109/clade.2004.1309094","title":"SIBIOS: a system for the integration of bioinformatics services","display_name":"SIBIOS: a system for the integration of bioinformatics services","publication_year":2004,"publication_date":"2004-11-13","ids":{"openalex":"https://openalex.org/W2125014646","doi":"https://doi.org/10.1109/clade.2004.1309094","mag":"2125014646"},"language":"en","primary_location":{"id":"doi:10.1109/clade.2004.1309094","is_oa":false,"landing_page_url":"https://doi.org/10.1109/clade.2004.1309094","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Second International Workshop on Challenges of Large Applications in Distributed Environments, 2004. CLADE 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083472980","display_name":"Zina Ben Miled","orcid":"https://orcid.org/0000-0001-5401-0368"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zina Ben Miled","raw_affiliation_strings":["Department of Electrical and Computer Engineering, IUPUI, Indianapolis, IN, United States","Dept. of Electr. & Comput. Eng., IUPUI, Indianapolis, IN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, IUPUI, Indianapolis, IN, United States","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., IUPUI, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101616323","display_name":"Na Gao","orcid":"https://orcid.org/0000-0002-9095-0987"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ning Gao","raw_affiliation_strings":["Department of Electrical and Computer Engineering, IUPUI, Indianapolis, IN, United States","Dept. of Electr. & Comput. Eng., IUPUI, Indianapolis, IN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, IUPUI, Indianapolis, IN, United States","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., IUPUI, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066893546","display_name":"Omran Bukhres","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"O. Bukhres","raw_affiliation_strings":["Department of Computer and Information Science, IUPUI, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, IUPUI, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107852580","display_name":"L. Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lingma Lu","raw_affiliation_strings":["Department of Computer and Information Science, IUPUI, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, IUPUI, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076723061","display_name":"N. Li","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nianhua Li","raw_affiliation_strings":["Department of Computer and Information Science, IUPUI, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, IUPUI, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107852581","display_name":"Y. He","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yue He","raw_affiliation_strings":["Department of Computer and Information Science, IUPUI, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, IUPUI, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062980935","display_name":"Malika Mahoui","orcid":"https://orcid.org/0000-0002-2025-0205"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Mahoui","raw_affiliation_strings":["IUPUI, School of Informatics, USA","[IUPUI, School of Informatics, USA]"],"affiliations":[{"raw_affiliation_string":"IUPUI, School of Informatics, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"[IUPUI, School of Informatics, USA]","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040560396","display_name":"J. Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Chen","raw_affiliation_strings":["IUPUI, School of Informatics, USA","[IUPUI, School of Informatics, USA]"],"affiliations":[{"raw_affiliation_string":"IUPUI, School of Informatics, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"[IUPUI, School of Informatics, USA]","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5083472980"],"corresponding_institution_ids":["https://openalex.org/I55769427"],"apc_list":null,"apc_paid":null,"fwci":2.4542,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.92024401,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":null,"biblio":{"volume":"266","issue":null,"first_page":"74","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.755695104598999},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7178364396095276},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6995164752006531},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4907558858394623},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.46815967559814453},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.45368680357933044},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.44089001417160034},{"id":"https://openalex.org/keywords/system-integration","display_name":"System integration","score":0.42510104179382324},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4179065525531769},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.41111159324645996},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35755854845046997},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32263562083244324},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3060966432094574},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2632966637611389},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2607709467411041},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08559677004814148}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.755695104598999},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7178364396095276},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6995164752006531},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4907558858394623},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.46815967559814453},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.45368680357933044},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.44089001417160034},{"id":"https://openalex.org/C19527686","wikidata":"https://www.wikidata.org/wiki/Q1665453","display_name":"System integration","level":2,"score":0.42510104179382324},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4179065525531769},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.41111159324645996},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35755854845046997},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32263562083244324},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3060966432094574},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2632966637611389},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2607709467411041},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08559677004814148},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/clade.2004.1309094","is_oa":false,"landing_page_url":"https://doi.org/10.1109/clade.2004.1309094","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Second International Workshop on Challenges of Large Applications in Distributed Environments, 2004. CLADE 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.47999998927116394,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W129475153","https://openalex.org/W1491628935","https://openalex.org/W1505561515","https://openalex.org/W1558365920","https://openalex.org/W1585782846","https://openalex.org/W1605242189","https://openalex.org/W1730348256","https://openalex.org/W1982481323","https://openalex.org/W1996423252","https://openalex.org/W1996902131","https://openalex.org/W2012268371","https://openalex.org/W2015292449","https://openalex.org/W2050490959","https://openalex.org/W2066636486","https://openalex.org/W2076066161","https://openalex.org/W2094258495","https://openalex.org/W2102017976","https://openalex.org/W2103425480","https://openalex.org/W2111973517","https://openalex.org/W2117249420","https://openalex.org/W2141195725","https://openalex.org/W2141885858","https://openalex.org/W2142237411","https://openalex.org/W2143173841","https://openalex.org/W2148374179","https://openalex.org/W2148853951","https://openalex.org/W2150908245","https://openalex.org/W2152038711","https://openalex.org/W2158714788","https://openalex.org/W2160948978","https://openalex.org/W2164507889","https://openalex.org/W2165495989","https://openalex.org/W2202860973","https://openalex.org/W2725758462","https://openalex.org/W4230224839","https://openalex.org/W4239696231","https://openalex.org/W4241509948","https://openalex.org/W4246395620","https://openalex.org/W4285719527","https://openalex.org/W6605422364","https://openalex.org/W6629520034","https://openalex.org/W6630292809"],"related_works":["https://openalex.org/W2922683035","https://openalex.org/W2354871320","https://openalex.org/W2371160083","https://openalex.org/W2355440778","https://openalex.org/W2109851973","https://openalex.org/W2375081721","https://openalex.org/W2388671335","https://openalex.org/W2389220471","https://openalex.org/W2370822643","https://openalex.org/W2351239176"],"abstract_inverted_index":{"Modern":[0],"biological":[1],"and":[2,21,31,60],"chemical":[3],"studies":[4],"rely":[5],"on":[6],"life":[7,55],"science":[8,56],"databases":[9],"as":[10,12,95,97],"well":[11,96],"sophisticated":[13],"software":[14,61],"tools":[15,25],"(e.g.,":[16],"homology":[17],"search":[18,58],"tools,":[19],"modeling":[20],"visualization":[22],"tools).":[23],"These":[24],"often":[26],"have":[27],"to":[28,35,91],"be":[29],"combined":[30],"integrated":[32],"in":[33,107],"order":[34],"support":[36],"a":[37],"given":[38],"study.":[39],"SIBIOS":[40],"(system":[41],"for":[42],"the":[43,67,74,88,93],"integration":[44,104],"of":[45,70,76,86,99],"bioinformatics":[46,82,100],"services)":[47],"serves":[48],"this":[49,108],"purpose.":[50],"The":[51,63,84],"services":[52,59],"are":[53,105],"both":[54],"database":[57],"tools.":[62],"task":[64],"engine":[65],"is":[66],"core":[68],"component":[69],"SIBIOS.":[71],"It":[72],"supports":[73],"execution":[75],"dynamic":[77],"workflows":[78],"that":[79],"incorporate":[80],"multiple":[81],"services.":[83],"architecture":[85],"SIBIOS,":[87],"approaches":[89],"used":[90],"address":[92],"heterogeneity":[94],"interoperability":[98],"services,":[101],"including":[102],"data":[103],"presented":[106],"paper.":[109]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
