{"id":"https://openalex.org/W2145457481","doi":"https://doi.org/10.1109/cit.2008.4594731","title":"Investigating the binding area of protein surface using MCL algorithm","display_name":"Investigating the binding area of protein surface using MCL algorithm","publication_year":2008,"publication_date":"2008-07-01","ids":{"openalex":"https://openalex.org/W2145457481","doi":"https://doi.org/10.1109/cit.2008.4594731","mag":"2145457481"},"language":"en","primary_location":{"id":"doi:10.1109/cit.2008.4594731","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cit.2008.4594731","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on Computer and Information Technology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111626464","display_name":"Kwang Su Jung","orcid":null},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Kwang Su Jung","raw_affiliation_strings":["Database Bioinformatics Laboratory, Chungbuk National University, South Korea","Database/Bioinf. Lab., Chungbuk Nat. Univ., Cheongju"],"affiliations":[{"raw_affiliation_string":"Database Bioinformatics Laboratory, Chungbuk National University, South Korea","institution_ids":["https://openalex.org/I163753206"]},{"raw_affiliation_string":"Database/Bioinf. Lab., Chungbuk Nat. Univ., Cheongju","institution_ids":["https://openalex.org/I163753206"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108639014","display_name":"Ki Jin Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ki Jin Yu","raw_affiliation_strings":["Database Bioinformatics Laboratory, Chungbuk National University, South Korea","Database/Bioinf. Lab., Chungbuk Nat. Univ., Cheongju"],"affiliations":[{"raw_affiliation_string":"Database Bioinformatics Laboratory, Chungbuk National University, South Korea","institution_ids":["https://openalex.org/I163753206"]},{"raw_affiliation_string":"Database/Bioinf. Lab., Chungbuk Nat. Univ., Cheongju","institution_ids":["https://openalex.org/I163753206"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111987669","display_name":"Yong Je Chung","orcid":null},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yong Je Chung","raw_affiliation_strings":["School of Life Science, Chungbuk National University, South Korea","School of Life Science, Chungbuk National Univiersity, Korea"],"affiliations":[{"raw_affiliation_string":"School of Life Science, Chungbuk National University, South Korea","institution_ids":["https://openalex.org/I163753206"]},{"raw_affiliation_string":"School of Life Science, Chungbuk National Univiersity, Korea","institution_ids":["https://openalex.org/I163753206"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043932631","display_name":"Keun Ho Ryu","orcid":"https://orcid.org/0000-0003-0394-9054"},"institutions":[{"id":"https://openalex.org/I163753206","display_name":"Chungbuk National University","ror":"https://ror.org/02wnxgj78","country_code":"KR","type":"education","lineage":["https://openalex.org/I163753206"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Keun Ho Ryu","raw_affiliation_strings":["Database Bioinformatics Laboratory, Chungbuk National University, South Korea","Database/BioInformatics Laboratory, Chungbuk National University, Korea"],"affiliations":[{"raw_affiliation_string":"Database Bioinformatics Laboratory, Chungbuk National University, South Korea","institution_ids":["https://openalex.org/I163753206"]},{"raw_affiliation_string":"Database/BioInformatics Laboratory, Chungbuk National University, Korea","institution_ids":["https://openalex.org/I163753206"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5111626464"],"corresponding_institution_ids":["https://openalex.org/I163753206"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12612421,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"532","last_page":"537"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5574352741241455},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.48538148403167725}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5574352741241455},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.48538148403167725}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cit.2008.4594731","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cit.2008.4594731","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on Computer and Information Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W16288466","https://openalex.org/W1490643065","https://openalex.org/W1534606537","https://openalex.org/W1539922738","https://openalex.org/W1585634379","https://openalex.org/W1964640688","https://openalex.org/W1969738839","https://openalex.org/W1970654380","https://openalex.org/W1975168057","https://openalex.org/W2015470526","https://openalex.org/W2030650909","https://openalex.org/W2031772330","https://openalex.org/W2053859275","https://openalex.org/W2077847478","https://openalex.org/W2091563009","https://openalex.org/W2094657451","https://openalex.org/W2094915211","https://openalex.org/W2114597228","https://openalex.org/W2121564430","https://openalex.org/W2124166542","https://openalex.org/W2133990057","https://openalex.org/W2136943603","https://openalex.org/W4243289382","https://openalex.org/W6635077098"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Proteins":[0],"combine":[1],"with":[2,119],"other":[3],"materials":[4],"to":[5,39,66],"achieve":[6],"a":[7,25,36,41],"variety":[8],"of":[9,72,111,122,127],"functions,":[10],"which":[11,93],"will":[12],"be":[13],"similar":[14],"if":[15],"their":[16],"active":[17,109,129,138],"sites":[18],"are":[19],"similar.":[20],"Thus":[21],"we":[22],"can":[23],"infer":[24],"protein\u2019s":[26,42],"function":[27],"by":[28,79,132],"identifying":[29],"its":[30],"binding":[31,43,105],"area.":[32],"This":[33],"paper":[34],"proposes":[35],"novel":[37],"method":[38],"select":[40],"area":[44],"using":[45,80,90],"the":[46,57,62,67,73,87,108,120,124,128,134,137],"Markov":[47],"Cluster":[48],"(MCL)":[49],"algorithm.":[50],"A":[51],"distance":[52,60],"matrix":[53,69],"is":[54],"constructed":[55],"from":[56],"surface":[58],"residues":[59,131,135],"on":[61],"protein,":[63],"then":[64],"transformed":[65],"connectivity":[68],"for":[70],"application":[71],"MCL":[74],"process,":[75],"and":[76],"finally":[77],"evaluated":[78],"Catalytic":[81],"Site":[82],"Atlas":[83],"(CSA)":[84],"data.":[85],"In":[86],"experimental":[88],"result":[89],"CSA":[91],"data":[92],"comprised":[94],"94":[95],"selected":[96],"single":[97],"chain":[98],"proteins,":[99],"our":[100],"algorithm":[101],"detects":[102],"91":[103],"(97%)":[104],"areas":[106],"near":[107,136],"site":[110,130],"each":[112],"protein.":[113],"We":[114],"introduced":[115],"new":[116],"geometrical":[117],"features":[118],"aim":[121],"improving":[123],"prediction":[125],"accuracy":[126],"selecting":[133],"site.":[139]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
