{"id":"https://openalex.org/W2100085573","doi":"https://doi.org/10.1109/cit.2006.196","title":"Whole Genome Alignment with BLAST on Grid Environment","display_name":"Whole Genome Alignment with BLAST on Grid Environment","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2100085573","doi":"https://doi.org/10.1109/cit.2006.196","mag":"2100085573"},"language":"en","primary_location":{"id":"doi:10.1109/cit.2006.196","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cit.2006.196","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Sixth IEEE International Conference on Computer and Information Technology (CIT'06)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100650467","display_name":"Min\u2010Sung Kim","orcid":"https://orcid.org/0000-0002-2369-9956"},"institutions":[{"id":"https://openalex.org/I4210166981","display_name":"SK Communications (South Korea)","ror":"https://ror.org/05y8c9413","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210166981"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Min-sung Kim","raw_affiliation_strings":["School of Engineering, Information and Communications University, Daejeon, South Korea","[Information and Communications University, Korea]"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Information and Communications University, Daejeon, South Korea","institution_ids":[]},{"raw_affiliation_string":"[Information and Communications University, Korea]","institution_ids":["https://openalex.org/I4210166981"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111916217","display_name":"Choong-Hyun Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166981","display_name":"SK Communications (South Korea)","ror":"https://ror.org/05y8c9413","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210166981"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Choong-hyun Sun","raw_affiliation_strings":["School of Engineering, Information and Communications University, Daejeon, South Korea","[Information and Communications University, Korea]"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Information and Communications University, Daejeon, South Korea","institution_ids":[]},{"raw_affiliation_string":"[Information and Communications University, Korea]","institution_ids":["https://openalex.org/I4210166981"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018434372","display_name":"Jin\u2010Ki Kim","orcid":"https://orcid.org/0000-0002-1944-1231"},"institutions":[{"id":"https://openalex.org/I4210166981","display_name":"SK Communications (South Korea)","ror":"https://ror.org/05y8c9413","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210166981"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jin-ki Kim","raw_affiliation_strings":["School of Engineering, Information and Communications University, Daejeon, South Korea","[Information and Communications University, Korea]"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Information and Communications University, Daejeon, South Korea","institution_ids":[]},{"raw_affiliation_string":"[Information and Communications University, Korea]","institution_ids":["https://openalex.org/I4210166981"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081941499","display_name":"Gwan\u2010Su Yi","orcid":"https://orcid.org/0000-0003-0012-6546"},"institutions":[{"id":"https://openalex.org/I4210166981","display_name":"SK Communications (South Korea)","ror":"https://ror.org/05y8c9413","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210166981"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Gwan-su Yi","raw_affiliation_strings":["School of Engineering, Information and Communications University, Daejeon, South Korea","[Information and Communications University, Korea]"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Information and Communications University, Daejeon, South Korea","institution_ids":[]},{"raw_affiliation_string":"[Information and Communications University, Korea]","institution_ids":["https://openalex.org/I4210166981"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100650467"],"corresponding_institution_ids":["https://openalex.org/I4210166981"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.11772843,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"47","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.7912651300430298},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6978963613510132},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6495531797409058},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.6270372867584229},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.6186611652374268},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.6183947324752808},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.6097043752670288},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6002874374389648},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.5036093592643738},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.41290807723999023},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.403897225856781},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32002678513526917},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2235405445098877},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2214421033859253},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10007348656654358},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08153858780860901}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.7912651300430298},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6978963613510132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6495531797409058},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.6270372867584229},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.6186611652374268},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.6183947324752808},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.6097043752670288},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6002874374389648},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5036093592643738},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.41290807723999023},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.403897225856781},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32002678513526917},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2235405445098877},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2214421033859253},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10007348656654358},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08153858780860901},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cit.2006.196","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cit.2006.196","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Sixth IEEE International Conference on Computer and Information Technology (CIT'06)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1966585515","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2057998009","https://openalex.org/W2121479060","https://openalex.org/W2122598328","https://openalex.org/W2136145671","https://openalex.org/W2151126719","https://openalex.org/W2152331922","https://openalex.org/W2158714788","https://openalex.org/W4236236547","https://openalex.org/W6806866965"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2468116983","https://openalex.org/W2111937814","https://openalex.org/W2103737249","https://openalex.org/W2948014085","https://openalex.org/W1486249959","https://openalex.org/W2029514038","https://openalex.org/W2141411672","https://openalex.org/W1482324242","https://openalex.org/W2122131968"],"abstract_inverted_index":{"BLAST":[0,47],"is":[1,18,80],"a":[2],"widely":[3],"used":[4,21,81],"sequence":[5,55],"alignment":[6,25,41,50,63,94,99],"tool":[7],"for":[8,59],"comparing":[9],"the":[10,34,60],"similarity":[11],"of":[12,27,62],"DNA":[13],"and":[14,57,87],"protein.":[15],"However,":[16],"it":[17],"not":[19],"commonly":[20],"in":[22,53],"whole":[23,75,84],"genome":[24,49,76,93],"because":[26],"its":[28],"computational":[29,35],"cost.":[30],"We":[31],"could":[32,68,97],"solve":[33],"problem":[36],"by":[37],"using":[38],"fragmentation":[39],"based":[40,48],"on":[42],"computing":[43],"grid":[44],"environment.":[45],"The":[46,78],"was":[51],"sensitive":[52],"target":[54],"finding":[56],"flexible":[58],"processing":[61],"results.":[64],"Therefore,":[65],"various":[66],"procedures":[67],"be":[69],"tested":[70],"to":[71,82,91],"get":[72,98],"more":[73],"accurate":[74],"alignment.":[77],"approach":[79],"align":[83],"human":[85],"chromosomes":[86],"mouse":[88],"chromosomes.":[89],"Compared":[90],"other":[92],"methods,":[95],"we":[96],"list":[100],"matched":[101],"well":[102],"with":[103],"known":[104],"synteny":[105],"map":[106],"data":[107],"within":[108],"reasonable":[109],"time.":[110]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}