{"id":"https://openalex.org/W2793400716","doi":"https://doi.org/10.1109/cisp-bmei.2017.8302274","title":"Identification of driver network modules in protein-protein interaction network using patient mutation profiles","display_name":"Identification of driver network modules in protein-protein interaction network using patient mutation profiles","publication_year":2017,"publication_date":"2017-10-01","ids":{"openalex":"https://openalex.org/W2793400716","doi":"https://doi.org/10.1109/cisp-bmei.2017.8302274","mag":"2793400716"},"language":"en","primary_location":{"id":"doi:10.1109/cisp-bmei.2017.8302274","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cisp-bmei.2017.8302274","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014371590","display_name":"Xiaocheng Liu","orcid":"https://orcid.org/0000-0002-6151-7914"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaocheng Liu","raw_affiliation_strings":["School of Information Science and Technology University of Science and Technology of China Hefei, China","School of Information Science and Technology, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology University of Science and Technology of China Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"School of Information Science and Technology, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006085047","display_name":"Jianing Xi","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianing Xi","raw_affiliation_strings":["School of Information Science and Technology University of Science and Technology of China Hefei, China","School of Information Science and Technology, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology University of Science and Technology of China Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"School of Information Science and Technology, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009070263","display_name":"Changran Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changran Zhang","raw_affiliation_strings":["School of Information Science and Technology University of Science and Technology of China Hefei, China","School of Information Science and Technology, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology University of Science and Technology of China Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"School of Information Science and Technology, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100963473","display_name":"Huanqing Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanqing Feng","raw_affiliation_strings":["School of Information Science and Technology University of Science and Technology of China Hefei, China","School of Information Science and Technology, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology University of Science and Technology of China Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"School of Information Science and Technology, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359729","display_name":"Ao Li","orcid":"https://orcid.org/0000-0001-9910-8967"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ao Li","raw_affiliation_strings":["School of Information Science and Technology University of Science and Technology of China Hefei, China","National Engineering Laboratory for Brain-inspired Intelligence Technology and Application, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology University of Science and Technology of China Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"National Engineering Laboratory for Brain-inspired Intelligence Technology and Application, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100376902","display_name":"Minghui Wang","orcid":"https://orcid.org/0000-0002-5788-894X"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minghui Wang","raw_affiliation_strings":["School of Information Science and Technology University of Science and Technology of China Hefei, China","National Engineering Laboratory for Brain-inspired Intelligence Technology and Application, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology University of Science and Technology of China Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"National Engineering Laboratory for Brain-inspired Intelligence Technology and Application, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5014371590"],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16682625,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5975505113601685},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5923076272010803},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.502326250076294},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.468395471572876},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4355001151561737},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.42217540740966797},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26207393407821655},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2420864701271057},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.18517181277275085}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5975505113601685},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5923076272010803},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.502326250076294},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.468395471572876},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4355001151561737},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.42217540740966797},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26207393407821655},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2420864701271057},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.18517181277275085},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cisp-bmei.2017.8302274","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cisp-bmei.2017.8302274","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6200000047683716}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1964154017","https://openalex.org/W1990584739","https://openalex.org/W1996697843","https://openalex.org/W2006007200","https://openalex.org/W2006316372","https://openalex.org/W2017283085","https://openalex.org/W2018824652","https://openalex.org/W2023568503","https://openalex.org/W2034269086","https://openalex.org/W2042851051","https://openalex.org/W2047923585","https://openalex.org/W2054035764","https://openalex.org/W2057545775","https://openalex.org/W2057552436","https://openalex.org/W2059300459","https://openalex.org/W2068187102","https://openalex.org/W2072572998","https://openalex.org/W2080310417","https://openalex.org/W2089655089","https://openalex.org/W2100628741","https://openalex.org/W2101897262","https://openalex.org/W2105428856","https://openalex.org/W2105956673","https://openalex.org/W2117692326","https://openalex.org/W2121443461","https://openalex.org/W2122261182","https://openalex.org/W2122769974","https://openalex.org/W2122863289","https://openalex.org/W2126172213","https://openalex.org/W2131323902","https://openalex.org/W2138003801","https://openalex.org/W2141811925","https://openalex.org/W2144940507","https://openalex.org/W2149441684","https://openalex.org/W2151258296","https://openalex.org/W2155330008","https://openalex.org/W2171662214","https://openalex.org/W2262513754","https://openalex.org/W2322139748","https://openalex.org/W4250605151"],"related_works":["https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W1972473893","https://openalex.org/W2466435674","https://openalex.org/W2765200542","https://openalex.org/W2367893528","https://openalex.org/W3107784576","https://openalex.org/W242750434"],"abstract_inverted_index":{"Large":[0],"genomic":[1],"projects":[2],"such":[3],"as":[4],"The":[5],"Cancer":[6],"Genome":[7],"Atlas":[8],"(TCGA)":[9],"offer":[10],"a":[11,32,177,182],"great":[12],"opportunity":[13],"to":[14,58,68,74,86,90,93,102,135,170],"conquer":[15],"the":[16,20,122,143,146],"challenge":[17],"of":[18,145,150],"distinguishing":[19],"driver":[21,60,65,70,96,119,151],"somatic":[22],"mutations":[23],"from":[24,44,54],"passenger":[25,161],"mutations.":[26],"In":[27],"this":[28],"paper,":[29],"we":[30],"propose":[31],"novel":[33],"method":[34,147],"called":[35],"FSME":[36,78,114,179],"Cluster,":[37],"which":[38,133],"integrates":[39],"gene":[40],"functionally":[41],"similarity":[42],"calculated":[43],"protein-protein":[45],"interaction":[46],"(PPI)":[47],"network":[48,61,83],"and":[49,72,109,126,164,174],"mutation":[50,56,162],"mutual":[51],"exclusivity":[52],"obtained":[53],"patient":[55],"profiles":[57],"identify":[59,69,94],"modules.":[62,97,152],"And":[63],"these":[64,127],"modules":[66,120,128],"contribute":[67],"genes":[71],"help":[73],"understand":[75],"tumorigenic":[76],"mechanisms.":[77],"utilizes":[79],"an":[80],"improved":[81],"hierarchical":[82],"cluster":[84],"methods":[85],"extract":[87],"maximal":[88],"cliques":[89],"be":[91],"used":[92],"overlapping":[95],"We":[98],"apply":[99],"our":[100],"algorithm":[101],"two":[103,123,187],"TCGA":[104],"datasets":[105,125],"including":[106],"glioblastoma":[107],"(GBM)":[108],"breast":[110],"cancer":[111,124,155],"(BRCA)":[112],"samples.":[113],"Cluster":[115,180],"successfully":[116],"identifies":[117],"several":[118],"in":[121,148],"contain":[129],"some":[130],"well-known":[131],"oncogenes":[132],"belong":[134],"p53,":[136],"Rb":[137],"or":[138],"PI3K":[139],"signaling":[140],"pathway,":[141],"validating":[142],"power":[144],"identification":[149],"Besides":[153],"real":[154],"datasets,":[156],"simulated":[157],"samples":[158],"with":[159,172],"various":[160],"rate":[163],"background":[165],"noise":[166],"are":[167],"also":[168],"generated":[169],"compare":[171],"Multi-Dendrix":[173],"RME.":[175],"As":[176],"result,":[178],"obtains":[181],"superior":[183],"performance":[184],"over":[185],"other":[186],"methods.":[188]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
