{"id":"https://openalex.org/W4403211586","doi":"https://doi.org/10.1109/cibcb58642.2024.10702112","title":"Comprehensive Modeling and Question Answering of Cancer Clinical Practice Guidelines using LLMs","display_name":"Comprehensive Modeling and Question Answering of Cancer Clinical Practice Guidelines using LLMs","publication_year":2024,"publication_date":"2024-08-27","ids":{"openalex":"https://openalex.org/W4403211586","doi":"https://doi.org/10.1109/cibcb58642.2024.10702112"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb58642.2024.10702112","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb58642.2024.10702112","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2501.13984","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075162620","display_name":"Bhumika Gupta","orcid":"https://orcid.org/0000-0001-6572-5705"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Bhumika Gupta","raw_affiliation_strings":["Indian Institute of Technology Madras,Department of Electrical Engineering,Chennai,India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology Madras,Department of Electrical Engineering,Chennai,India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092513660","display_name":"Pralaypati Ta","orcid":"https://orcid.org/0009-0005-6764-1288"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Pralaypati Ta","raw_affiliation_strings":["Indian Institute of Technology Madras,Department of Electrical Engineering,Chennai,India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology Madras,Department of Electrical Engineering,Chennai,India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083037666","display_name":"Keerthi Ram","orcid":"https://orcid.org/0000-0002-0555-1923"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]},{"id":"https://openalex.org/I4210102197","display_name":"Healthcare Technology Innovation Centre","ror":"https://ror.org/017mw4x28","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210102197"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Keerthi Ram","raw_affiliation_strings":["Indian Institute of Technology Madras,Healthcare Technology Innovation Centre,Chennai,India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology Madras,Healthcare Technology Innovation Centre,Chennai,India","institution_ids":["https://openalex.org/I4210102197","https://openalex.org/I24676775"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056763944","display_name":"Mohanasankar Sivaprakasam","orcid":"https://orcid.org/0000-0002-6714-9147"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Mohanasankar Sivaprakasam","raw_affiliation_strings":["Indian Institute of Technology Madras,Department of Electrical Engineering,Chennai,India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology Madras,Department of Electrical Engineering,Chennai,India","institution_ids":["https://openalex.org/I24676775"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5075162620"],"corresponding_institution_ids":["https://openalex.org/I24676775"],"apc_list":null,"apc_paid":null,"fwci":1.1355,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.8048138,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9595000147819519,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.512393057346344},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5015554428100586},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.46765774488449097},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.31032809615135193},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.282632976770401},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.11945056915283203}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.512393057346344},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5015554428100586},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.46765774488449097},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.31032809615135193},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.282632976770401},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.11945056915283203}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb58642.2024.10702112","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb58642.2024.10702112","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2501.13984","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2501.13984","pdf_url":"https://arxiv.org/pdf/2501.13984","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2501.13984","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2501.13984","pdf_url":"https://arxiv.org/pdf/2501.13984","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4403211586.pdf"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W30637911","https://openalex.org/W1583837637","https://openalex.org/W2148437670","https://openalex.org/W2301363727","https://openalex.org/W2613830568","https://openalex.org/W3096935699","https://openalex.org/W3112559567","https://openalex.org/W4205098185","https://openalex.org/W4240615046","https://openalex.org/W4241421681","https://openalex.org/W4244006029","https://openalex.org/W4255852734","https://openalex.org/W4292779060","https://openalex.org/W4293149334","https://openalex.org/W4307184229","https://openalex.org/W4362515116","https://openalex.org/W4383473003","https://openalex.org/W4385681375","https://openalex.org/W4386730038","https://openalex.org/W4392085924","https://openalex.org/W4392489041","https://openalex.org/W4392691776","https://openalex.org/W6601263509","https://openalex.org/W6675630465","https://openalex.org/W6676044145","https://openalex.org/W6683386176","https://openalex.org/W6683858747","https://openalex.org/W6685142909","https://openalex.org/W6733349445","https://openalex.org/W6755853832","https://openalex.org/W6772441754","https://openalex.org/W6773236156","https://openalex.org/W6778883912","https://openalex.org/W6784026053","https://openalex.org/W6785380005","https://openalex.org/W6787825575","https://openalex.org/W6809763422","https://openalex.org/W6841853363","https://openalex.org/W6842080761","https://openalex.org/W6851775633","https://openalex.org/W6853281113","https://openalex.org/W6853755534","https://openalex.org/W6855069793","https://openalex.org/W6855293677","https://openalex.org/W6855547235","https://openalex.org/W6861947616","https://openalex.org/W6862548038","https://openalex.org/W6882710358"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2384605597","https://openalex.org/W2387743295","https://openalex.org/W3082787378","https://openalex.org/W2136007095","https://openalex.org/W2366230879","https://openalex.org/W3208425359","https://openalex.org/W2349927912"],"abstract_inverted_index":{"The":[0],"updated":[1],"recommendations":[2],"on":[3,167,189],"diagnostic":[4],"procedures":[5],"and":[6,50,118,145,150,192,202],"treatment":[7,35],"pathways":[8],"for":[9,69,137,159],"a":[10,66,96,157],"medical":[11,31,84,211],"condition":[12],"are":[13],"documented":[14],"as":[15],"graphical":[16],"flows":[17],"in":[18,29,33,53,87,110,210],"Clinical":[19,70],"Practice":[20],"Guidelines":[21],"(CPGs).":[22],"For":[23],"effective":[24],"use":[25],"of":[26,102,113,128,143,199],"the":[27,34,44,48,54,82,111,129,175,179,197],"CPGs":[28,109],"helping":[30],"professionals":[32],"decision":[36],"process,":[37],"it":[38],"is":[39],"necessary":[40],"to":[41,64,94,173],"fully":[42],"capture":[43],"guideline":[45,168,180],"knowledge,":[46],"particularly":[47],"contexts":[49],"their":[51],"relationships":[52],"graph.":[55],"While":[56],"several":[57],"existing":[58],"works":[59],"have":[60],"utilized":[61],"these":[62],"guidelines":[63],"create":[65,95],"rule":[67],"base":[68],"Decision":[71],"Support":[72],"Systems,":[73],"limited":[74],"work":[75,90],"has":[76],"been":[77],"done":[78],"toward":[79],"directly":[80],"capturing":[81],"full":[83],"knowledge":[85,181],"contained":[86],"CPGs.":[88],"This":[89],"proposes":[91],"an":[92,141],"approach":[93],"contextually":[97],"enriched,":[98],"faithful":[99],"digital":[100],"representation":[101],"National":[103],"Comprehensive":[104],"Cancer":[105,108],"Network":[106],"(NCCN)":[107],"form":[112],"graphs":[114],"using":[115,132],"automated":[116],"extraction":[117],"node":[119,138],"&":[120],"relationship":[121],"classification.":[122],"We":[123],"also":[124],"implement":[125],"semantic":[126,193],"enrichment":[127],"model":[130],"by":[131,170],"Large":[133],"Language":[134],"Models":[135],"(LLMs)":[136],"classification,":[139],"achieving":[140],"accuracy":[142,209],"80.86%":[144],"88.47%":[146],"with":[147,164,205],"zero-shot":[148],"learning":[149],"few-shot":[151],"learning,":[152],"respectively.":[153],"Additionally,":[154],"we":[155,195],"introduce":[156],"methodology":[158],"answering":[160],"natural":[161,185],"language":[162,186],"questions":[163],"constraints":[165],"based":[166,188],"text":[169],"leveraging":[171],"LLMs":[172],"extract":[174],"relevant":[176],"subgraph":[177,190],"from":[178],"base.":[182],"By":[183],"generating":[184],"answers":[187,201],"paths":[191],"information,":[194],"mitigate":[196],"risk":[198],"incorrect":[200],"hallucinations":[203],"associated":[204],"LLMs,":[206],"ensuring":[207],"factual":[208],"domain":[212],"question":[213],"answering.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
