{"id":"https://openalex.org/W4387251311","doi":"https://doi.org/10.1109/cibcb56990.2023.10264908","title":"Consensus Clustering Strategy for Cell Type Assignments of scRNA-seq Data","display_name":"Consensus Clustering Strategy for Cell Type Assignments of scRNA-seq Data","publication_year":2023,"publication_date":"2023-08-29","ids":{"openalex":"https://openalex.org/W4387251311","doi":"https://doi.org/10.1109/cibcb56990.2023.10264908"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb56990.2023.10264908","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/cibcb56990.2023.10264908","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043006240","display_name":"Simone G. Riva","orcid":"https://orcid.org/0000-0002-4400-9328"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simone G. Riva","raw_affiliation_strings":["Weatherall Institute of Molecular Medicine,Oxford,UK","Radcliffe Department of Medicine, University of Oxford, Oxford, UK","Weatherall Institute of Molecular Medicine, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weatherall Institute of Molecular Medicine,Oxford,UK","institution_ids":["https://openalex.org/I4210110594"]},{"raw_affiliation_string":"Radcliffe Department of Medicine, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Weatherall Institute of Molecular Medicine, Oxford, UK","institution_ids":["https://openalex.org/I4210110594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061715518","display_name":"Brynelle Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I1336263701","display_name":"Centre for Human Genetics","ror":"https://ror.org/01rjnta51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1336263701","https://openalex.org/I40120149"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Brynelle Myers","raw_affiliation_strings":["University of Oxford,Wellcome Centre for Human Genetics,Oxford,UK","Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Oxford,Wellcome Centre for Human Genetics,Oxford,UK","institution_ids":["https://openalex.org/I1336263701"]},{"raw_affiliation_string":"Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I1336263701","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013723473","display_name":"Paolo Cazzaniga","orcid":"https://orcid.org/0000-0001-7780-0434"},"institutions":[{"id":"https://openalex.org/I11039511","display_name":"University of Bergamo","ror":"https://ror.org/02mbd5571","country_code":"IT","type":"education","lineage":["https://openalex.org/I11039511"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Cazzaniga","raw_affiliation_strings":["University of Bergamo,Department of Human and Social Sciences,Bergamo,Italy","Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy","Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bergamo,Department of Human and Social Sciences,Bergamo,Italy","institution_ids":["https://openalex.org/I11039511"]},{"raw_affiliation_string":"Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy","institution_ids":["https://openalex.org/I11039511"]},{"raw_affiliation_string":"Bicocca Bioinformatics, Biostatistics and Bioimaging Centre - B4, Milano, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075865182","display_name":"Francesca M. Buffa","orcid":"https://orcid.org/0000-0003-0409-406X"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I71209653","display_name":"Bocconi University","ror":"https://ror.org/05crjpb27","country_code":"IT","type":"education","lineage":["https://openalex.org/I71209653"]}],"countries":["GB","IT"],"is_corresponding":false,"raw_author_name":"Francesca M. Buffa","raw_affiliation_strings":["University of Oxford,Department of Oncology,Oxford,UK","Department of Oncology, University of Oxford, Oxford, UK","Department of Computing Sciences, Bocconi University, Bocconi Institute for Data Science and Analytics, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Oxford,Department of Oncology,Oxford,UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Oncology, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Computing Sciences, Bocconi University, Bocconi Institute for Data Science and Analytics, Milan, Italy","institution_ids":["https://openalex.org/I71209653"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056055676","display_name":"Andrea Tangherloni","orcid":"https://orcid.org/0000-0002-5856-4453"},"institutions":[{"id":"https://openalex.org/I71209653","display_name":"Bocconi University","ror":"https://ror.org/05crjpb27","country_code":"IT","type":"education","lineage":["https://openalex.org/I71209653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Tangherloni","raw_affiliation_strings":["Bocconi Institute for Data Science and Analytics,Department of Computing Sciences Bocconi University,Milan,Italy","Department of Computing Sciences Bocconi University, Bocconi Institute for Data Science and Analytics, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bocconi Institute for Data Science and Analytics,Department of Computing Sciences Bocconi University,Milan,Italy","institution_ids":["https://openalex.org/I71209653"]},{"raw_affiliation_string":"Department of Computing Sciences Bocconi University, Bocconi Institute for Data Science and Analytics, Milan, Italy","institution_ids":["https://openalex.org/I71209653"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2853,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.63502619,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"16","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9506000280380249,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.78827965259552},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7606749534606934},{"id":"https://openalex.org/keywords/voting","display_name":"Voting","score":0.6458730101585388},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6450188159942627},{"id":"https://openalex.org/keywords/consensus-clustering","display_name":"Consensus clustering","score":0.6226780414581299},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.5296461582183838},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5163213610649109},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5160036087036133},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4860380291938782},{"id":"https://openalex.org/keywords/majority-rule","display_name":"Majority rule","score":0.4612637162208557},{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.4481569230556488},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4110880196094513},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30493438243865967},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.2970661222934723},{"id":"https://openalex.org/keywords/cure-data-clustering-algorithm","display_name":"CURE data clustering algorithm","score":0.27025389671325684},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1000610888004303}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.78827965259552},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7606749534606934},{"id":"https://openalex.org/C520049643","wikidata":"https://www.wikidata.org/wiki/Q189760","display_name":"Voting","level":3,"score":0.6458730101585388},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6450188159942627},{"id":"https://openalex.org/C186767784","wikidata":"https://www.wikidata.org/wiki/Q5162841","display_name":"Consensus clustering","level":5,"score":0.6226780414581299},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.5296461582183838},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5163213610649109},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5160036087036133},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4860380291938782},{"id":"https://openalex.org/C153668964","wikidata":"https://www.wikidata.org/wiki/Q27636","display_name":"Majority rule","level":2,"score":0.4612637162208557},{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.4481569230556488},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4110880196094513},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30493438243865967},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.2970661222934723},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.27025389671325684},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1000610888004303},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb56990.2023.10264908","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/cibcb56990.2023.10264908","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:aisberg.unibg.it:10446/263953","is_oa":false,"landing_page_url":"https://hdl.handle.net/10446/263953","pdf_url":null,"source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3147485722","display_name":null,"funder_award_id":"MC_UU_00029/3","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W78031170","https://openalex.org/W1978380673","https://openalex.org/W1991645955","https://openalex.org/W2047555270","https://openalex.org/W2087932775","https://openalex.org/W2128366083","https://openalex.org/W2135964318","https://openalex.org/W2140190241","https://openalex.org/W2142094474","https://openalex.org/W2146980885","https://openalex.org/W2162833336","https://openalex.org/W2622807556","https://openalex.org/W2733722625","https://openalex.org/W2792649309","https://openalex.org/W2794480084","https://openalex.org/W2794521141","https://openalex.org/W2806983506","https://openalex.org/W2895456557","https://openalex.org/W2897249806","https://openalex.org/W2898718502","https://openalex.org/W2901006884","https://openalex.org/W2907783748","https://openalex.org/W2949177718","https://openalex.org/W2962073995","https://openalex.org/W2964643116","https://openalex.org/W2973034691","https://openalex.org/W2993952845","https://openalex.org/W3001485171","https://openalex.org/W3004512212","https://openalex.org/W3024842005","https://openalex.org/W3037216933","https://openalex.org/W3106188259","https://openalex.org/W3114485724","https://openalex.org/W3124814274","https://openalex.org/W3140605903","https://openalex.org/W3165190053","https://openalex.org/W3166637187","https://openalex.org/W3190088085","https://openalex.org/W4205514149","https://openalex.org/W4206438867","https://openalex.org/W4214611015","https://openalex.org/W4221065117","https://openalex.org/W4280578638","https://openalex.org/W4293519310","https://openalex.org/W4294884148","https://openalex.org/W6684050148","https://openalex.org/W6773647517","https://openalex.org/W6797098268","https://openalex.org/W6809048309"],"related_works":["https://openalex.org/W1974340769","https://openalex.org/W2900595096","https://openalex.org/W4289277241","https://openalex.org/W2979322793","https://openalex.org/W2765801824","https://openalex.org/W2188068678","https://openalex.org/W2157302779","https://openalex.org/W4236723217","https://openalex.org/W4226363062","https://openalex.org/W2611629964"],"abstract_inverted_index":{"Cell":[0],"type":[1,143],"annotation":[2,144],"is":[3,22,77],"a":[4,23,94,113,122,147],"crucial":[5],"step":[6],"for":[7],"analyzing":[8],"single-cell":[9,15],"RNA":[10],"sequencing":[11],"data.":[12,39],"Among":[13],"others,":[14],"Automatic":[16],"Labeling":[17],"of":[18,43,62,121,124],"cell":[19,31,142],"POpulations":[20],"(scALPO)":[21],"computational":[24],"pipeline":[25],"developed":[26],"to":[27,33,79,92],"automatically":[28],"assign":[29],"the":[30,34,44,50,60,63,73,87,119,136,141,154],"types":[32],"identified":[35],"clusters":[36],"in":[37,100,108],"scRNA-seq":[38],"Different":[40],"from":[41,55,66,70],"most":[42],"approaches,":[45],"scALPO":[46],"relies":[47],"only":[48],"on":[49,52,130],"information":[51,68],"marker":[53],"genes":[54],"published":[56],"literature.":[57],"Specifically,":[58],"after":[59],"definition":[61],"dataset":[64],"obtained":[65,129],"gene":[67],"retrieved":[69],"online":[71],"databases,":[72],"Leiden":[74,88],"clustering":[75,106,125,149],"algorithm":[76,89,150],"executed":[78],"partition":[80],"cells":[81],"that":[82,117,135,151],"are":[83],"finally":[84],"annotated.":[85],"Since":[86],"might":[90],"struggle":[91],"obtain":[93],"reliable":[95],"outcome":[96,120],"under":[97,156],"certain":[98],"circumstances,":[99],"this":[101],"work,":[102],"we":[103,111],"include":[104],"several":[105],"algorithms":[107],"scALPO,":[109],"and":[110],"propose":[112],"pseudo-voting":[114],"consensus":[115,137],"approach":[116,138],"combines":[118],"set":[123],"algorithms.":[126],"The":[127],"results":[128],"three":[131],"different":[132],"datasets":[133],"show":[134],"can":[139],"improve":[140],"without":[145],"selecting":[146],"specific":[148],"best":[152],"suits":[153],"data":[155],"investigation.":[157]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2023-10-03T00:00:00"}
