{"id":"https://openalex.org/W4293794829","doi":"https://doi.org/10.1109/cibcb55180.2022.9863043","title":"geneDRAGNN: Gene Disease Prioritization using Graph Neural Networks","display_name":"geneDRAGNN: Gene Disease Prioritization using Graph Neural Networks","publication_year":2022,"publication_date":"2022-08-15","ids":{"openalex":"https://openalex.org/W4293794829","doi":"https://doi.org/10.1109/cibcb55180.2022.9863043"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb55180.2022.9863043","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb55180.2022.9863043","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078489512","display_name":"Awni Altabaa","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Awni Altabaa","raw_affiliation_strings":["Queen&#x0027;s University,Department of Mathematics and Statistics,Kingston,Canada"],"affiliations":[{"raw_affiliation_string":"Queen&#x0027;s University,Department of Mathematics and Statistics,Kingston,Canada","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038899884","display_name":"David Huang","orcid":"https://orcid.org/0000-0001-5498-0268"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David Huang","raw_affiliation_strings":["School of Computing, Queen&#x0027;s University,Kingston,Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing, Queen&#x0027;s University,Kingston,Canada","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036115734","display_name":"Ciaran Byles-Ho","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ciaran Byles-Ho","raw_affiliation_strings":["Queen&#x0027;s University,Department of Engineering Physics,Kingston,Canada"],"affiliations":[{"raw_affiliation_string":"Queen&#x0027;s University,Department of Engineering Physics,Kingston,Canada","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013352977","display_name":"Hani Khatib","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hani Khatib","raw_affiliation_strings":["Smith School of Business, Queen&#x0027;s University,Kingston,Canada"],"affiliations":[{"raw_affiliation_string":"Smith School of Business, Queen&#x0027;s University,Kingston,Canada","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017174145","display_name":"Fabian Sosa","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fabian Sosa","raw_affiliation_strings":["Queen&#x0027;s University,Department of Electrical Engineering,Kingston,Canada"],"affiliations":[{"raw_affiliation_string":"Queen&#x0027;s University,Department of Electrical Engineering,Kingston,Canada","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075046931","display_name":"Ting Hu","orcid":"https://orcid.org/0000-0001-6382-0602"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ting Hu","raw_affiliation_strings":["School of Computing, Queen&#x0027;s University,Kingston,Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing, Queen&#x0027;s University,Kingston,Canada","institution_ids":["https://openalex.org/I204722609"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5078489512"],"corresponding_institution_ids":["https://openalex.org/I204722609"],"apc_list":null,"apc_paid":null,"fwci":0.3431,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.55273521,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6104140281677246},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5828613638877869},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5565881133079529},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5168850421905518},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5085891485214233},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4369594156742096},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.39954257011413574},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33218473196029663},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3266281485557556},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3099520802497864},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20652076601982117},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1848236620426178},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15885207056999207},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08472797274589539}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6104140281677246},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5828613638877869},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5565881133079529},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5168850421905518},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5085891485214233},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4369594156742096},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39954257011413574},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33218473196029663},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3266281485557556},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3099520802497864},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20652076601982117},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1848236620426178},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15885207056999207},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08472797274589539}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb55180.2022.9863043","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb55180.2022.9863043","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1983487056","https://openalex.org/W2000263590","https://openalex.org/W2012257814","https://openalex.org/W2020301095","https://openalex.org/W2038122249","https://openalex.org/W2053039860","https://openalex.org/W2056782561","https://openalex.org/W2062533676","https://openalex.org/W2073688130","https://openalex.org/W2090247362","https://openalex.org/W2097498614","https://openalex.org/W2115382934","https://openalex.org/W2117024463","https://openalex.org/W2119220491","https://openalex.org/W2119943416","https://openalex.org/W2123688186","https://openalex.org/W2123958887","https://openalex.org/W2131978771","https://openalex.org/W2145371674","https://openalex.org/W2154851992","https://openalex.org/W2168708357","https://openalex.org/W2521492299","https://openalex.org/W2765323781","https://openalex.org/W2780779540","https://openalex.org/W2783681041","https://openalex.org/W2794999358","https://openalex.org/W2799259690","https://openalex.org/W2819428052","https://openalex.org/W2848983148","https://openalex.org/W2890210261","https://openalex.org/W2900569176","https://openalex.org/W2912672202","https://openalex.org/W2916106175","https://openalex.org/W2918710707","https://openalex.org/W2945827377","https://openalex.org/W2957359913","https://openalex.org/W2962756421","https://openalex.org/W2964015378","https://openalex.org/W2964321699","https://openalex.org/W2983166786","https://openalex.org/W2994901719","https://openalex.org/W3005523023","https://openalex.org/W3009746164","https://openalex.org/W3016558758","https://openalex.org/W3045143113","https://openalex.org/W3101553402","https://openalex.org/W3104097132","https://openalex.org/W3107527779","https://openalex.org/W3108155943","https://openalex.org/W3133283981","https://openalex.org/W3152893301","https://openalex.org/W4206482253","https://openalex.org/W4226503039","https://openalex.org/W4285723986","https://openalex.org/W6720006811","https://openalex.org/W6726873649","https://openalex.org/W6745316256","https://openalex.org/W6758750616"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W2391251536","https://openalex.org/W2362198218","https://openalex.org/W1982750869","https://openalex.org/W2019521278","https://openalex.org/W1984922432","https://openalex.org/W2113077220","https://openalex.org/W2375008505","https://openalex.org/W2350679292","https://openalex.org/W2086348228"],"abstract_inverted_index":{"Many":[0],"human":[1],"diseases":[2],"exhibit":[3],"a":[4,15,61,107],"complex":[5,42],"genetic":[6],"etiology":[7],"impacted":[8],"by":[9],"various":[10],"genes":[11],"and":[12,32,58,65,119,129],"proteins":[13],"in":[14],"large":[16],"network":[17,89],"of":[18,22,39,95,110],"interactions.":[19],"The":[20],"process":[21],"evaluating":[23],"gene-disease":[24,78,96,117],"associations":[25,118],"through":[26,126],"in-vivo":[27],"experiments":[28],"is":[29],"both":[30],"time-consuming":[31],"expensive.":[33],"Thus,":[34],"network-based":[35],"computational":[36],"methods":[37],"capable":[38],"modeling":[40],"the":[41,86,93,124],"interplay":[43],"between":[44],"molecular":[45],"components":[46],"can":[47,90],"lead":[48],"to":[49,104],"more":[50],"targeted":[51],"evaluation.":[52],"In":[53],"this":[54,102],"paper,":[55],"we":[56],"propose":[57],"evaluate":[59],"geneDRAGNN:":[60],"general":[62],"data":[63],"processing":[64],"machine":[66],"learning":[67],"methodology":[68,103],"for":[69,76,123],"exploiting":[70],"information":[71,83],"about":[72],"gene-gene":[73,87],"interaction":[74,88],"networks":[75],"predicting":[77],"association.":[79],"We":[80,100,113],"demonstrate":[81],"that":[82],"derived":[84],"from":[85],"significantly":[91],"improve":[92],"performance":[94],"association":[97,125],"prediction":[98],"models.":[99],"apply":[101],"lung":[105,111],"adenocarcinoma,":[106],"histological":[108],"subtype":[109],"cancer.":[112],"identify":[114],"new":[115],"potential":[116],"provide":[120],"supportive":[121],"evidence":[122],"gene-set":[127],"enrichment":[128],"literature":[130],"based":[131],"analysis.":[132]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
