{"id":"https://openalex.org/W3206330457","doi":"https://doi.org/10.1109/cibcb49929.2021.9562959","title":"Predicting Influenza A Viral Host Using PSSM and Word Embeddings","display_name":"Predicting Influenza A Viral Host Using PSSM and Word Embeddings","publication_year":2021,"publication_date":"2021-10-13","ids":{"openalex":"https://openalex.org/W3206330457","doi":"https://doi.org/10.1109/cibcb49929.2021.9562959","mag":"3206330457"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb49929.2021.9562959","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562959","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2201.01140","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007408738","display_name":"Yanhua Xu","orcid":"https://orcid.org/0000-0003-1028-9023"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Yanhua Xu","raw_affiliation_strings":["University of Liverpool,Department of Computer Science,Liverpool,UK","Department of Computer Science, University of Liverpool, Liverpool, UK"],"affiliations":[{"raw_affiliation_string":"University of Liverpool,Department of Computer Science,Liverpool,UK","institution_ids":["https://openalex.org/I146655781"]},{"raw_affiliation_string":"Department of Computer Science, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001234060","display_name":"Dominik Wojtczak","orcid":"https://orcid.org/0000-0001-5560-0546"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dominik Wojtczak","raw_affiliation_strings":["University of Liverpool,Department of Computer Science,Liverpool,UK","Department of Computer Science, University of Liverpool, Liverpool, UK"],"affiliations":[{"raw_affiliation_string":"University of Liverpool,Department of Computer Science,Liverpool,UK","institution_ids":["https://openalex.org/I146655781"]},{"raw_affiliation_string":"Department of Computer Science, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007408738"],"corresponding_institution_ids":["https://openalex.org/I146655781"],"apc_list":null,"apc_paid":null,"fwci":0.452,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.6537844,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11243","display_name":"Respiratory viral infections research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.7410868406295776},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6474915742874146},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.584430992603302},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5521470904350281},{"id":"https://openalex.org/keywords/reassortment","display_name":"Reassortment","score":0.5358027219772339},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5149229764938354},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49578651785850525},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43966323137283325},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.4218960404396057},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3837921917438507},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38061124086380005},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.30178308486938477},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2375662624835968},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09602552652359009},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.08085706830024719},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.07704430818557739}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.7410868406295776},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6474915742874146},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.584430992603302},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5521470904350281},{"id":"https://openalex.org/C16154277","wikidata":"https://www.wikidata.org/wiki/Q2004399","display_name":"Reassortment","level":5,"score":0.5358027219772339},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5149229764938354},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49578651785850525},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43966323137283325},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4218960404396057},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3837921917438507},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38061124086380005},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.30178308486938477},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2375662624835968},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09602552652359009},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.08085706830024719},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.07704430818557739},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb49929.2021.9562959","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562959","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2201.01140","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2201.01140","pdf_url":"https://arxiv.org/pdf/2201.01140","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2201.01140","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2201.01140","pdf_url":"https://arxiv.org/pdf/2201.01140","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8500000238418579,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320323","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W63710172","https://openalex.org/W1578397781","https://openalex.org/W1614298861","https://openalex.org/W1930624869","https://openalex.org/W1966229889","https://openalex.org/W1975670646","https://openalex.org/W1983941241","https://openalex.org/W2005584594","https://openalex.org/W2015359732","https://openalex.org/W2015403041","https://openalex.org/W2021312899","https://openalex.org/W2029436281","https://openalex.org/W2030793934","https://openalex.org/W2041753380","https://openalex.org/W2045934762","https://openalex.org/W2062773909","https://openalex.org/W2068361619","https://openalex.org/W2107923020","https://openalex.org/W2111359724","https://openalex.org/W2112114816","https://openalex.org/W2119611042","https://openalex.org/W2121009566","https://openalex.org/W2128486459","https://openalex.org/W2135107501","https://openalex.org/W2137378887","https://openalex.org/W2147863530","https://openalex.org/W2147901189","https://openalex.org/W2154776925","https://openalex.org/W2158714788","https://openalex.org/W2160881014","https://openalex.org/W2164759261","https://openalex.org/W2164860726","https://openalex.org/W2295598076","https://openalex.org/W2557112659","https://openalex.org/W2767813829","https://openalex.org/W2890347237","https://openalex.org/W2903201721","https://openalex.org/W2905269166","https://openalex.org/W2950577311","https://openalex.org/W2987073966","https://openalex.org/W2996470210","https://openalex.org/W3048846953","https://openalex.org/W3102476541","https://openalex.org/W4214926090","https://openalex.org/W4237236497","https://openalex.org/W4237959566","https://openalex.org/W4239333374","https://openalex.org/W6640462745","https://openalex.org/W6682981795","https://openalex.org/W6782325559"],"related_works":["https://openalex.org/W4288407670","https://openalex.org/W947140380","https://openalex.org/W4286432911","https://openalex.org/W4230884544","https://openalex.org/W4245453790","https://openalex.org/W3194985222","https://openalex.org/W3216571906","https://openalex.org/W4214830338","https://openalex.org/W2518587255","https://openalex.org/W4287599800"],"abstract_inverted_index":{"The":[0,95,119],"rapid":[1,49],"mutation":[2],"of":[3,30,51,61,93,101],"influenza":[4,39],"virus":[5,32],"threatens":[6],"public":[7],"health.":[8],"Reassortment":[9],"among":[10],"viruses":[11,40],"with":[12,70,125],"different":[13,44],"hosts":[14],"can":[15,41],"lead":[16],"to":[17,25,88],"a":[18],"fatal":[19],"pandemic.":[20],"However,":[21],"it":[22],"is":[23,128,137],"difficult":[24],"detect":[26],"the":[27,31,52,58,62,74,90,99,102,106,111,123,132],"original":[28],"host":[29,54,92],"during":[33],"or":[34],"after":[35],"an":[36],"outbreak":[37],"as":[38],"circulate":[42],"between":[43],"species.":[45],"Therefore,":[46],"early":[47],"and":[48,79,85,110,131],"detection":[50],"viral":[53],"would":[55],"help":[56],"reduce":[57],"further":[59],"spread":[60],"virus.":[63],"We":[64],"use":[65],"various":[66],"machine":[67],"learning":[68],"models":[69],"features":[71,80],"derived":[72],"from":[73,82],"position-specific":[75],"scoring":[76],"matrix":[77],"(PSSM)":[78],"learned":[81],"word":[83,86,126],"embedding":[84,127],"encoding":[87],"infer":[89],"origin":[91],"viruses.":[94],"results":[96],"show":[97],"that":[98],"performance":[100],"PSSM-based":[103],"model":[104,124],"reaches":[105],"MCC":[107,120],"around":[108,117,129,138],"95%,":[109],"F":[112,133],"<inf":[113,134],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[114,135],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">1</inf>":[115,136],",":[116],"96%.":[118],"obtained":[121],"using":[122],"96%,":[130],"97%.":[139]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
