{"id":"https://openalex.org/W3157554109","doi":"https://doi.org/10.1109/cibcb49929.2021.9562931","title":"Quantitative Estimate of Protein-Protein Interaction Targeting Drug-likeness","display_name":"Quantitative Estimate of Protein-Protein Interaction Targeting Drug-likeness","publication_year":2021,"publication_date":"2021-10-13","ids":{"openalex":"https://openalex.org/W3157554109","doi":"https://doi.org/10.1109/cibcb49929.2021.9562931","mag":"3157554109"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb49929.2021.9562931","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562931","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://t2r2.star.titech.ac.jp/rrws/file/CTT100862955/ATD100000413/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006707011","display_name":"Takatsugu Kosugi","orcid":"https://orcid.org/0000-0001-5155-8125"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Takatsugi Kosugi","raw_affiliation_strings":["Department of Computer Science, School of Computing Tokyo Institute of Technology, Kanagawa, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, School of Computing Tokyo Institute of Technology, Kanagawa, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061510293","display_name":"Masahito Ohue","orcid":"https://orcid.org/0000-0002-0120-1643"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahito Ohue","raw_affiliation_strings":["Department of Computer Science, School of Computing Tokyo Institute of Technology, Kanagawa, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, School of Computing Tokyo Institute of Technology, Kanagawa, Japan","institution_ids":["https://openalex.org/I114531698"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006707011"],"corresponding_institution_ids":["https://openalex.org/I114531698"],"apc_list":null,"apc_paid":null,"fwci":0.7573,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.74966938,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9546999931335449,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.739749014377594},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.5356314778327942},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43755123019218445},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.4257127046585083},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4180831015110016},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.4118981957435608},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36969679594039917},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3423570394515991},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3377743661403656},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.15975138545036316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1478213369846344},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1275639832019806}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.739749014377594},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.5356314778327942},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43755123019218445},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.4257127046585083},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4180831015110016},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.4118981957435608},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36969679594039917},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3423570394515991},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3377743661403656},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.15975138545036316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1478213369846344},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1275639832019806}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb49929.2021.9562931","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562931","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:t2r2.star.titech.ac.jp:50599407","is_oa":true,"landing_page_url":"http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100862955","pdf_url":"http://t2r2.star.titech.ac.jp/rrws/file/CTT100862955/ATD100000413/","source":{"id":"https://openalex.org/S4377196385","display_name":"Tokyo Tech Research Repository (Tokyo Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114531698","host_organization_name":"Tokyo Institute of Technology","host_organization_lineage":["https://openalex.org/I114531698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":{"id":"pmh:oai:t2r2.star.titech.ac.jp:50599407","is_oa":true,"landing_page_url":"http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100862955","pdf_url":"http://t2r2.star.titech.ac.jp/rrws/file/CTT100862955/ATD100000413/","source":{"id":"https://openalex.org/S4377196385","display_name":"Tokyo Tech Research Repository (Tokyo Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114531698","host_organization_name":"Tokyo Institute of Technology","host_organization_lineage":["https://openalex.org/I114531698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},"sustainable_development_goals":[{"score":0.699999988079071,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1755812565","display_name":null,"funder_award_id":"Japan Science and Technology Agency","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3165036053","display_name":null,"funder_award_id":"ACT-X","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G3838432050","display_name":null,"funder_award_id":"JPMJAX20A3","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5256887504","display_name":null,"funder_award_id":"Japan Society for the Promotion of Science (JSPS)","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6013431047","display_name":null,"funder_award_id":"20H04280","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6362425154","display_name":null,"funder_award_id":"KAKENHI","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320338246","display_name":"ACT-X","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3157554109.pdf","grobid_xml":"https://content.openalex.org/works/W3157554109.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1980621088","https://openalex.org/W1981737096","https://openalex.org/W2028826413","https://openalex.org/W2034549041","https://openalex.org/W2034801992","https://openalex.org/W2041755933","https://openalex.org/W2060531713","https://openalex.org/W2066273100","https://openalex.org/W2092332972","https://openalex.org/W2128247932","https://openalex.org/W2135732933","https://openalex.org/W2153411138","https://openalex.org/W2155589321","https://openalex.org/W2167398093","https://openalex.org/W2217901364","https://openalex.org/W2338762894","https://openalex.org/W2767891136","https://openalex.org/W2805002767","https://openalex.org/W2806351858","https://openalex.org/W2810270855","https://openalex.org/W2820941669","https://openalex.org/W2945103729","https://openalex.org/W3093053585","https://openalex.org/W3094640617","https://openalex.org/W3100043476","https://openalex.org/W3104537585","https://openalex.org/W3118960334","https://openalex.org/W4248107770","https://openalex.org/W4297951436"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2772481372","https://openalex.org/W4309130954","https://openalex.org/W2365243819","https://openalex.org/W2152784570","https://openalex.org/W2991546386","https://openalex.org/W4367329971","https://openalex.org/W2348919896","https://openalex.org/W2099768941"],"abstract_inverted_index":{"The":[0,11,139],"quantification":[1,237],"of":[2,14,63,73,80,110,151,163,195,207,219,222,238,257],"drug-likeness":[3,15,67,239],"is":[4,17,34,77,144],"very":[5],"useful":[6],"for":[7,38,70,84,147,240,254],"screening":[8,39,72,150,256],"drug":[9,23,243],"candidates.":[10],"quantitative":[12,22,61],"estimate":[13,62],"(QED)":[16],"the":[18,60,81,90,99,103,107,117,148,192,205,220,265],"most":[19],"commonly":[20],"used":[21,249],"efficacy":[24],"assessment":[25],"method":[26,58,83],"proposed":[27,170],"by":[28,171],"Bickerton":[29],"et":[30,173],"al.":[31,174],"However,":[32],"QED":[33,82,91],"not":[35],"considered":[36,159],"suitable":[37,146],"compounds":[40,111,153,209],"that":[41,112,142],"target":[42],"protein-protein":[43,64],"interactions":[44],"(PPI),":[45],"which":[46,126,260],"have":[47,113,176],"garnered":[48],"significant":[49],"interest":[50],"in":[51,116,124,264],"recent":[52],"years.":[53],"Therefore,":[54],"we":[55,199],"developed":[56,88],"a":[57,166,181,186],"called":[59],"interaction":[65],"targeting":[66],"(QEPPI),":[68],"specifically":[69],"early-stage":[71,241],"PPI-targeting":[74,85,152,258],"compounds.":[75],"QEPPI":[76,105,143,156,196,225,231],"an":[78,160,251],"extension":[79],"drugs":[86,134,212],"and":[87,130,132,197,210,215,224,228,235],"using":[89,137,204,213],"concept,":[92],"involving":[93],"modeling":[94],"physicochemical":[95,108],"properties":[96,109],"based":[97],"on":[98,102,121],"information":[100],"available":[101],"drug.":[104],"models":[106],"been":[114,177,262],"reported":[115],"literature":[118],"to":[119,179],"act":[120],"PPIs.":[122],"Compounds":[123],"iPPI-DB,":[125],"comprises":[127],"PPI":[128,167,242],"inhibitors":[129],"stabilizers,":[131],"FDA-approved":[133,211],"were":[135,226],"evaluated":[136,200],"QEPPI.":[138],"results":[140],"showed":[141],"more":[145],"early":[149],"than":[154],"QED.":[155],"was":[157],"also":[158],"extended":[161],"concept":[162],"\u201cRule-of-Four\u201d":[164],"(RO4),":[165],"inhibitor":[168],"index":[169],"Morelli":[172],"We":[175],"able":[178],"turn":[180],"discrete":[182],"value":[183,188],"indicator":[184],"into":[185],"continuous":[187],"indicator.":[189],"To":[190],"compare":[191],"discriminatory":[193,202],"performance":[194,203,234],"RO4,":[198],"their":[201],"datasets":[206],"PPI-target":[208],"F-score":[214,221],"other":[216],"indices.":[217],"Results":[218],"RO4":[223],"0.446":[227],"0.499,":[229],"respectively.":[230],"demonstrated":[232],"better":[233],"enabled":[236],"discovery.":[244],"Hence,":[245],"it":[246],"could":[247],"be":[248],"as":[250],"initial":[252],"filter":[253],"efficient":[255],"compounds,":[259],"has":[261],"difficult":[263],"past.":[266]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
