{"id":"https://openalex.org/W3205743829","doi":"https://doi.org/10.1109/cibcb49929.2021.9562855","title":"Discovering Missing Edges in Drug-Protein Networks: Repurposing Drugs for SARS-CoV-2","display_name":"Discovering Missing Edges in Drug-Protein Networks: Repurposing Drugs for SARS-CoV-2","publication_year":2021,"publication_date":"2021-10-13","ids":{"openalex":"https://openalex.org/W3205743829","doi":"https://doi.org/10.1109/cibcb49929.2021.9562855","mag":"3205743829"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb49929.2021.9562855","is_oa":true,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562855","pdf_url":"https://ieeexplore.ieee.org/ielx7/9562742/9562772/09562855.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/9562742/9562772/09562855.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019924133","display_name":"Fatemeh ZareMehrjardi","orcid":null},"institutions":[{"id":"https://openalex.org/I197191942","display_name":"St. Francis Xavier University","ror":"https://ror.org/01wcaxs37","country_code":"CA","type":"education","lineage":["https://openalex.org/I197191942"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Fatemeh ZareMehrjardi","raw_affiliation_strings":["St. Francis Xavier University Computer Science, Antigonish, NS, Canada"],"affiliations":[{"raw_affiliation_string":"St. Francis Xavier University Computer Science, Antigonish, NS, Canada","institution_ids":["https://openalex.org/I197191942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014804754","display_name":"Athar Omidi","orcid":null},"institutions":[{"id":"https://openalex.org/I197191942","display_name":"St. Francis Xavier University","ror":"https://ror.org/01wcaxs37","country_code":"CA","type":"education","lineage":["https://openalex.org/I197191942"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Athar Omidi","raw_affiliation_strings":["St. Francis Xavier University Computer Science, Antigonish, NS, Canada"],"affiliations":[{"raw_affiliation_string":"St. Francis Xavier University Computer Science, Antigonish, NS, Canada","institution_ids":["https://openalex.org/I197191942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061623492","display_name":"Cristina D. Sciortino","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Cristina Sciortino","raw_affiliation_strings":["University of Toronto Leslie Dan Faculty of Pharmacy, Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"University of Toronto Leslie Dan Faculty of Pharmacy, Toronto, ON, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024250574","display_name":"Ryan E.R. Reid","orcid":"https://orcid.org/0000-0002-8573-1413"},"institutions":[{"id":"https://openalex.org/I197191942","display_name":"St. Francis Xavier University","ror":"https://ror.org/01wcaxs37","country_code":"CA","type":"education","lineage":["https://openalex.org/I197191942"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ryan E.R. Reid","raw_affiliation_strings":["St. Francis Xavier University Human Kinetics, Antigonish, NS, Canada"],"affiliations":[{"raw_affiliation_string":"St. Francis Xavier University Human Kinetics, Antigonish, NS, Canada","institution_ids":["https://openalex.org/I197191942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016288243","display_name":"Ryan Lukeman","orcid":"https://orcid.org/0000-0001-8210-7685"},"institutions":[{"id":"https://openalex.org/I197191942","display_name":"St. Francis Xavier University","ror":"https://ror.org/01wcaxs37","country_code":"CA","type":"education","lineage":["https://openalex.org/I197191942"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ryan Lukeman","raw_affiliation_strings":["St. Francis Xavier University Math & Stats Antigonish, NS, Canada"],"affiliations":[{"raw_affiliation_string":"St. Francis Xavier University Math & Stats Antigonish, NS, Canada","institution_ids":["https://openalex.org/I197191942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101863280","display_name":"James Alexander Hughes","orcid":"https://orcid.org/0000-0003-1397-4317"},"institutions":[{"id":"https://openalex.org/I197191942","display_name":"St. Francis Xavier University","ror":"https://ror.org/01wcaxs37","country_code":"CA","type":"education","lineage":["https://openalex.org/I197191942"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"James Alexander Hughes","raw_affiliation_strings":["St. Francis Xavier University Computer Science, Antigonish, NS, Canada"],"affiliations":[{"raw_affiliation_string":"St. Francis Xavier University Computer Science, Antigonish, NS, Canada","institution_ids":["https://openalex.org/I197191942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074769323","display_name":"Othman Soufan","orcid":null},"institutions":[{"id":"https://openalex.org/I197191942","display_name":"St. Francis Xavier University","ror":"https://ror.org/01wcaxs37","country_code":"CA","type":"education","lineage":["https://openalex.org/I197191942"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Othman Soufan","raw_affiliation_strings":["St. Francis Xavier University Computer Science, Antigonish, NS, Canada"],"affiliations":[{"raw_affiliation_string":"St. Francis Xavier University Computer Science, Antigonish, NS, Canada","institution_ids":["https://openalex.org/I197191942"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5019924133"],"corresponding_institution_ids":["https://openalex.org/I197191942"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18706063,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9449999928474426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.8909916877746582},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.7075777649879456},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.675987720489502},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.650364875793457},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6402862071990967},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5408703684806824},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5065404176712036},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.49144017696380615},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.481655478477478},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4791116714477539},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4413217008113861},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43455082178115845},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40149229764938354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35588157176971436},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2769925892353058},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20770159363746643},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15443453192710876},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.14796662330627441},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13450980186462402},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.08245602250099182}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.8909916877746582},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.7075777649879456},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.675987720489502},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.650364875793457},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6402862071990967},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5408703684806824},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5065404176712036},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.49144017696380615},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.481655478477478},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4791116714477539},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4413217008113861},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43455082178115845},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40149229764938354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35588157176971436},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2769925892353058},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20770159363746643},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15443453192710876},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.14796662330627441},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13450980186462402},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.08245602250099182},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb49929.2021.9562855","is_oa":true,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562855","pdf_url":"https://ieeexplore.ieee.org/ielx7/9562742/9562772/09562855.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1109/cibcb49929.2021.9562855","is_oa":true,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562855","pdf_url":"https://ieeexplore.ieee.org/ielx7/9562742/9562772/09562855.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8500000238418579,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320313016","display_name":"St. Francis Xavier University","ror":"https://ror.org/01wcaxs37"},{"id":"https://openalex.org/F4320314000","display_name":"Compute Canada","ror":"https://ror.org/03ty8yr27"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3205743829.pdf","grobid_xml":"https://content.openalex.org/works/W3205743829.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W1983478747","https://openalex.org/W2029348196","https://openalex.org/W2302413701","https://openalex.org/W2549713104","https://openalex.org/W2618625858","https://openalex.org/W2957050889","https://openalex.org/W2964113829","https://openalex.org/W3004318991","https://openalex.org/W3009436665","https://openalex.org/W3010821291","https://openalex.org/W3011011579","https://openalex.org/W3013154398","https://openalex.org/W3013467637","https://openalex.org/W3014852814","https://openalex.org/W3015741518","https://openalex.org/W3015822162","https://openalex.org/W3016550836","https://openalex.org/W3016885747","https://openalex.org/W3017112736","https://openalex.org/W3018203086","https://openalex.org/W3020514163","https://openalex.org/W3020896479","https://openalex.org/W3021395543","https://openalex.org/W3022285953","https://openalex.org/W3024591296","https://openalex.org/W3024785058","https://openalex.org/W3025162460","https://openalex.org/W3027884463","https://openalex.org/W3028287286","https://openalex.org/W3028498292","https://openalex.org/W3033803860","https://openalex.org/W3036921664","https://openalex.org/W3037387136","https://openalex.org/W3039465695","https://openalex.org/W3042692818","https://openalex.org/W3048904234","https://openalex.org/W3077459578","https://openalex.org/W3085429933","https://openalex.org/W3086559195","https://openalex.org/W3087194367","https://openalex.org/W3087428053","https://openalex.org/W3087559531","https://openalex.org/W3091679860","https://openalex.org/W3092793876","https://openalex.org/W3092962910","https://openalex.org/W3096661050","https://openalex.org/W3099551661","https://openalex.org/W3102920585","https://openalex.org/W3104560899","https://openalex.org/W3107626709","https://openalex.org/W3107931159","https://openalex.org/W3112686701","https://openalex.org/W3119812673","https://openalex.org/W3131492093","https://openalex.org/W3132116837","https://openalex.org/W3139456311","https://openalex.org/W3140115405","https://openalex.org/W3151236758","https://openalex.org/W3152668228","https://openalex.org/W3153687303","https://openalex.org/W3155792797","https://openalex.org/W3159848633","https://openalex.org/W4233664966","https://openalex.org/W4247466386","https://openalex.org/W4285508996","https://openalex.org/W6685350579","https://openalex.org/W6738599175","https://openalex.org/W6774511864","https://openalex.org/W6775744927","https://openalex.org/W6776284726","https://openalex.org/W6776952877","https://openalex.org/W6777766135","https://openalex.org/W6783452904","https://openalex.org/W6785748368","https://openalex.org/W6789704750","https://openalex.org/W6791945745","https://openalex.org/W6793658227","https://openalex.org/W6793849511"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4396858017","https://openalex.org/W4400165188","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001"],"abstract_inverted_index":{"The":[0,137],"COVID-19":[1,134],"pandemic,":[2],"caused":[3],"by":[4,22,111,130],"the":[5,56,59,112,124,127,131],"SARS-CoV-2":[6],"virus,":[7],"led":[8],"to":[9,38,50,97,144,152],"a":[10,48,82,115,150],"global":[11],"health":[12],"crisis,":[13],"with":[14,114],"more":[15],"than":[16],"157":[17],"million":[18],"cases":[19],"confirmed":[20],"infected":[21],"May":[23],"2021.":[24],"Effective":[25],"medication":[26],"is":[27,34],"desperately":[28],"needed.":[29],"Predicting":[30],"drug-target":[31],"interaction":[32,65],"(DTI)":[33],"an":[35],"important":[36],"step":[37],"discover":[39],"novel":[40,52,103],"uses":[41],"of":[42,58,123,126],"chemical":[43],"structures.":[44],"Here,":[45],"we":[46],"develop":[47],"pipeline":[49],"predict":[51,102,153],"DTIs":[53,104],"based":[54],"on":[55],"proteins":[57],"coronavirus.":[60],"Different":[61],"datasets":[62,80],"(human/SARS-CoV-2":[63],"Protein-Protein":[64],"(PPI),":[66],"Drug-Drug":[67],"similarity":[68],"(DD":[69],"sim),":[70],"and":[71,75,101],"DTIs)":[72],"are":[73,87,118,135],"used":[74],"combined.":[76],"After":[77],"mapping":[78],"all":[79],"onto":[81],"heterogeneous":[83],"graph,":[84],"path-related":[85],"features":[86,147],"extracted.":[88],"We":[89],"then":[90,141],"applied":[91],"various":[92],"machine":[93],"learning":[94],"(ML)":[95],"algorithms":[96],"model":[98,139],"our":[99],"dataset":[100],"among":[105],"unlabeled":[106],"pairs.":[107],"Possible":[108],"drugs":[109],"identified":[110],"models":[113,132],"high":[116],"frequency":[117],"reported.":[119],"In":[120],"addition,":[121],"evidence":[122],"efficiency":[125],"predicted":[128],"medicines":[129],"against":[133],"presented.":[136],"proposed":[138],"can":[140],"be":[142],"generalized":[143],"contain":[145],"other":[146],"that":[148],"provide":[149],"context":[151],"medicine":[154],"for":[155],"different":[156],"diseases.":[157]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
