{"id":"https://openalex.org/W3207177628","doi":"https://doi.org/10.1109/cibcb49929.2021.9562838","title":"Efficacy and accuracy responses of DNA mini-barcodes in species identification under a supervised machine learning approach","display_name":"Efficacy and accuracy responses of DNA mini-barcodes in species identification under a supervised machine learning approach","publication_year":2021,"publication_date":"2021-10-13","ids":{"openalex":"https://openalex.org/W3207177628","doi":"https://doi.org/10.1109/cibcb49929.2021.9562838","mag":"3207177628"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb49929.2021.9562838","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046709217","display_name":"Mohimenul Karim","orcid":"https://orcid.org/0000-0003-2808-7788"},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]}],"countries":["BD"],"is_corresponding":true,"raw_author_name":"Mohimenul Karim","raw_affiliation_strings":["Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049894982","display_name":"Rashid Abid","orcid":"https://orcid.org/0000-0003-3986-4984"},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Rashid Abid","raw_affiliation_strings":["Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046709217"],"corresponding_institution_ids":["https://openalex.org/I183697816"],"apc_list":null,"apc_paid":null,"fwci":0.1609,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.49340182,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.9573746919631958},{"id":"https://openalex.org/keywords/dna-barcoding","display_name":"DNA barcoding","score":0.8757816553115845},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7074110507965088},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5973321795463562},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5367639660835266},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5188266634941101},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4520443081855774},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.44915008544921875},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.42841437458992004},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40350213646888733},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.08621552586555481}],"concepts":[{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.9573746919631958},{"id":"https://openalex.org/C141732470","wikidata":"https://www.wikidata.org/wiki/Q1154642","display_name":"DNA barcoding","level":2,"score":0.8757816553115845},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7074110507965088},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5973321795463562},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5367639660835266},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5188266634941101},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4520443081855774},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.44915008544921875},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.42841437458992004},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40350213646888733},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.08621552586555481},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb49929.2021.9562838","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb49929.2021.9562838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W179179905","https://openalex.org/W1558365920","https://openalex.org/W1905421268","https://openalex.org/W1949176574","https://openalex.org/W1968197856","https://openalex.org/W1968401845","https://openalex.org/W1973922567","https://openalex.org/W1975020480","https://openalex.org/W1987262828","https://openalex.org/W1988297489","https://openalex.org/W1996816368","https://openalex.org/W2003070761","https://openalex.org/W2005951061","https://openalex.org/W2016231246","https://openalex.org/W2031324152","https://openalex.org/W2031498927","https://openalex.org/W2035739249","https://openalex.org/W2040452926","https://openalex.org/W2053062370","https://openalex.org/W2055043387","https://openalex.org/W2058514264","https://openalex.org/W2062633146","https://openalex.org/W2065838202","https://openalex.org/W2071510336","https://openalex.org/W2085525886","https://openalex.org/W2088481129","https://openalex.org/W2091279207","https://openalex.org/W2094580832","https://openalex.org/W2097706568","https://openalex.org/W2097758022","https://openalex.org/W2097793126","https://openalex.org/W2097804561","https://openalex.org/W2098419476","https://openalex.org/W2098637861","https://openalex.org/W2099901798","https://openalex.org/W2101350700","https://openalex.org/W2101654334","https://openalex.org/W2102494588","https://openalex.org/W2102883209","https://openalex.org/W2103546861","https://openalex.org/W2108268490","https://openalex.org/W2110375946","https://openalex.org/W2117060467","https://openalex.org/W2118889842","https://openalex.org/W2121121523","https://openalex.org/W2133445144","https://openalex.org/W2135503985","https://openalex.org/W2135691213","https://openalex.org/W2139397304","https://openalex.org/W2160378127","https://openalex.org/W2161444534","https://openalex.org/W2164747063","https://openalex.org/W2168149629","https://openalex.org/W2168864305","https://openalex.org/W2170596217","https://openalex.org/W2171405751","https://openalex.org/W2171591688","https://openalex.org/W2299137948","https://openalex.org/W2374887188","https://openalex.org/W2399505870","https://openalex.org/W2472248166","https://openalex.org/W2605557282","https://openalex.org/W2765634926","https://openalex.org/W2904510600","https://openalex.org/W2920614507","https://openalex.org/W2927168226","https://openalex.org/W2938565222","https://openalex.org/W2966700757","https://openalex.org/W2978026028","https://openalex.org/W3008531261","https://openalex.org/W3086141885","https://openalex.org/W3121953277","https://openalex.org/W4236236547","https://openalex.org/W6607259140","https://openalex.org/W6674647444"],"related_works":["https://openalex.org/W2402613932","https://openalex.org/W2111456242","https://openalex.org/W4291786356","https://openalex.org/W2360712899","https://openalex.org/W2097619744","https://openalex.org/W2509660947","https://openalex.org/W2394007119","https://openalex.org/W2032317445","https://openalex.org/W2184079388","https://openalex.org/W2911724990"],"abstract_inverted_index":{"Specific":[0],"gene":[1],"regions":[2],"in":[3,14,114,167,170],"DNA,":[4,58],"such":[5],"as":[6,18,25],"cytochrome":[7],"<tex":[8],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[9],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$\\mathbf{c}$</tex>":[10],"oxidase":[11],"I":[12],"(COI)":[13],"animals,":[15],"are":[16,79,103],"defined":[17],"DNA":[19,35,196],"barcodes":[20],"and":[21,52,144,177],"can":[22,85],"be":[23],"used":[24],"identifiers":[26],"to":[27,64,88,124,161],"distinguish":[28],"species.":[29],"The":[30],"standard":[31],"length":[32,152,193],"of":[33,45,55,70,112,133,149,153,181,194],"a":[34,118,146],"barcode":[36,68,83,135,197],"is":[37,60,122,159],"approximately":[38],"650":[39],"base":[40],"pairs":[41],"(bp),":[42],"However,":[43,105],"because":[44],"the":[46,53,66,96,110,131,150,154,179,182,186,192,195],"challenges":[47],"associated":[48],"with":[49],"sequencing":[50],"technologies":[51],"unavailability":[54],"high-quality":[56],"genomic":[57],"it":[59],"not":[61],"always":[62],"possible":[63],"obtain":[65],"full-length":[67],"sequence":[69],"an":[71],"organism.":[72],"Recent":[73],"studies":[74],"suggest":[75],"that":[76],"mini-barcodes,":[77],"which":[78],"shorter":[80],"(100\u2013300":[81],"bp)":[82],"sequences,":[84],"contribute":[86],"significantly":[87],"species":[89,115,138,168],"identification.":[90],"Among":[91],"various":[92],"methods":[93,102,166],"proposed":[94,145],"for":[95],"identification":[97,116,139,169],"task,":[98],"supervised":[99,141,165],"machine":[100,119,142],"learning":[101,120,143],"effective.":[104],"any":[106],"prior":[107],"work":[108],"indicating":[109],"efficacy":[111],"mini-barcodes":[113],"under":[117],"approach":[121],"elusive":[123],"find.":[125],"In":[126],"this":[127,175],"study,":[128],"we":[129,173],"analyzed":[130],"effect":[132],"different":[134],"lengths":[136],"on":[137],"using":[140],"general":[147],"approximation":[148],"required":[151],"mini-barcode.":[155],"Since":[156],"Na\u00efve":[157],"Bayes":[158],"seen":[160],"generally":[162],"outperform":[163],"other":[164,171],"studies,":[172],"implemented":[174],"classifier":[176],"showed":[178],"effectiveness":[180],"mini-barcode":[183],"by":[184],"demonstrating":[185],"accuracy":[187],"responses":[188],"obtained":[189],"after":[190],"varying":[191],"sequences.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
