{"id":"https://openalex.org/W2762772098","doi":"https://doi.org/10.1109/cibcb.2017.8058539","title":"Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases","display_name":"Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases","publication_year":2017,"publication_date":"2017-08-01","ids":{"openalex":"https://openalex.org/W2762772098","doi":"https://doi.org/10.1109/cibcb.2017.8058539","mag":"2762772098"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2017.8058539","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2017.8058539","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060589819","display_name":"Farideh Halakou","orcid":null},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Farideh Halakou","raw_affiliation_strings":["Computer Science and Engineering Department, Koc University, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Koc University, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036278069","display_name":"Attila G\u00fcrsoy","orcid":"https://orcid.org/0000-0002-2297-2113"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Attila Gursoy","raw_affiliation_strings":["Computer Science and Engineering Department, Koc University, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Koc University, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068524960","display_name":"Emel Sen-Kilic","orcid":"https://orcid.org/0000-0003-1583-2056"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Emel Sen Kilic","raw_affiliation_strings":["Chemical and Biological Engineering Department, Koc University, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chemical and Biological Engineering Department, Koc University, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057115991","display_name":"\u00d6zlem Keskin","orcid":"https://orcid.org/0000-0002-4202-4049"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ozlem Keskin","raw_affiliation_strings":["Chemical and Biological Engineering Department, Koc University, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chemical and Biological Engineering Department, Koc University, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I1351752"],"apc_list":null,"apc_paid":null,"fwci":0.3365,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60954805,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"129","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.8015705347061157},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.675225019454956},{"id":"https://openalex.org/keywords/metastasis","display_name":"Metastasis","score":0.6054723858833313},{"id":"https://openalex.org/keywords/brain-metastasis","display_name":"Brain metastasis","score":0.5843420624732971},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.5500839352607727},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.5246310830116272},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.46859684586524963},{"id":"https://openalex.org/keywords/chemokine","display_name":"Chemokine","score":0.4600304365158081},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4557466506958008},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45478522777557373},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.4348278045654297},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4322276711463928},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38276129961013794},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3692389130592346},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.3584752082824707},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3447607159614563},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.34065118432044983},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.28190070390701294},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1995079219341278},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18258175253868103},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1550590693950653},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.14355146884918213},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13678821921348572}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.8015705347061157},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.675225019454956},{"id":"https://openalex.org/C2779013556","wikidata":"https://www.wikidata.org/wiki/Q181876","display_name":"Metastasis","level":3,"score":0.6054723858833313},{"id":"https://openalex.org/C2778164965","wikidata":"https://www.wikidata.org/wiki/Q1620196","display_name":"Brain metastasis","level":4,"score":0.5843420624732971},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.5500839352607727},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.5246310830116272},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.46859684586524963},{"id":"https://openalex.org/C13373296","wikidata":"https://www.wikidata.org/wiki/Q421866","display_name":"Chemokine","level":3,"score":0.4600304365158081},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4557466506958008},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45478522777557373},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.4348278045654297},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4322276711463928},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38276129961013794},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3692389130592346},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.3584752082824707},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3447607159614563},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.34065118432044983},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.28190070390701294},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1995079219341278},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18258175253868103},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1550590693950653},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.14355146884918213},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13678821921348572}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2017.8058539","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2017.8058539","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8799999952316284}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W570450981","https://openalex.org/W1978596758","https://openalex.org/W1980800453","https://openalex.org/W1998203484","https://openalex.org/W1998203652","https://openalex.org/W2004280628","https://openalex.org/W2006683252","https://openalex.org/W2009405916","https://openalex.org/W2027839585","https://openalex.org/W2028820256","https://openalex.org/W2031942960","https://openalex.org/W2047259303","https://openalex.org/W2057151160","https://openalex.org/W2061332887","https://openalex.org/W2064603835","https://openalex.org/W2080240378","https://openalex.org/W2082833890","https://openalex.org/W2089370460","https://openalex.org/W2091710329","https://openalex.org/W2092155756","https://openalex.org/W2097690822","https://openalex.org/W2101900454","https://openalex.org/W2105924489","https://openalex.org/W2106787323","https://openalex.org/W2115778648","https://openalex.org/W2132619290","https://openalex.org/W2135924325","https://openalex.org/W2150318080","https://openalex.org/W2150902060","https://openalex.org/W2152444476","https://openalex.org/W2155728143","https://openalex.org/W2156323704","https://openalex.org/W2158945625","https://openalex.org/W2162128823","https://openalex.org/W2167867998","https://openalex.org/W2169589032","https://openalex.org/W2171544336","https://openalex.org/W2346755598","https://openalex.org/W6616135103"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W1984964356","https://openalex.org/W3120676751","https://openalex.org/W1923384484"],"abstract_inverted_index":{"Breast":[0],"cancer":[1,47,76],"is":[2,14],"the":[3,18,23,133,140,150,167,177,187,195],"second":[4],"most":[5,45],"common":[6],"cause":[7],"of":[8,36,74,179,190,197],"death":[9],"among":[10],"women.":[11],"However,":[12],"it":[13],"not":[15],"deadly":[16],"if":[17],"cancerous":[19,30],"cells":[20,31],"remain":[21],"in":[22,69,162],"breast.":[24],"The":[25,123],"life":[26],"threat":[27],"starts":[28],"when":[29],"travel":[32],"to":[33,52,97,117,155],"other":[34,53,151],"parts":[35],"body":[37],"like":[38],"lung,":[39],"liver,":[40],"bone":[41],"and":[42,62,71,91,109,119,136],"brain.":[43],"So,":[44],"breast":[46,75],"deaths":[48],"derive":[49],"from":[50],"metastasis":[51],"organs.":[54],"In":[55],"this":[56],"study,":[57],"we":[58,106,175,193],"introduce":[59],"novel":[60,111],"proteins":[61],"cellular":[63],"pathways":[64,130,153],"that":[65,114,128],"play":[66],"important":[67,145],"roles":[68],"brain":[70,103,120,163],"lung":[72,101,118,147],"metastases":[73],"using":[77,186],"Protein-Protein":[78],"Interaction":[79],"(PPI)":[80],"networks.":[81],"Our":[82],"topological":[83],"analysis":[84,126],"identified":[85],"genes":[86,113],"such":[87],"as":[88],"RPL5,":[89],"MMP2":[90],"DPP4":[92],"which":[93],"are":[94,115,144],"already":[95],"known":[96],"be":[98],"associated":[99,131],"with":[100,132,171],"or":[102],"metastasis.":[104,148,164],"Additionally,":[105],"found":[107],"four":[108],"nine":[110],"candidate":[112],"specific":[116,182],"metastases,":[121],"respectively.":[122],"functional":[124],"enrichment":[125],"showed":[127],"KEGG":[129],"immune":[134],"system":[135],"infectious":[137],"diseases,":[138],"particularly":[139],"chemokine":[141],"signaling":[142],"pathway,":[143],"for":[146],"On":[149],"hand,":[152],"related":[154],"genetic":[156],"information":[157],"processing":[158],"were":[159],"more":[160],"involved":[161],"By":[165,185],"enriching":[166],"traditional":[168],"PPI":[169],"network":[170],"protein":[172,191],"structural":[173],"data,":[174],"show":[176,194],"effects":[178],"mutations":[180],"on":[181,200],"protein-protein":[183],"interactions.":[184],"different":[188],"conformations":[189],"CXCL12,":[192],"effect":[196],"H25R":[198],"mutation":[199],"CXCL12":[201],"dimerization.":[202]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
