{"id":"https://openalex.org/W2761741010","doi":"https://doi.org/10.1109/cibcb.2017.8058527","title":"Reference-free compression of next-generation sequencing data in FASTQ format","display_name":"Reference-free compression of next-generation sequencing data in FASTQ format","publication_year":2017,"publication_date":"2017-08-01","ids":{"openalex":"https://openalex.org/W2761741010","doi":"https://doi.org/10.1109/cibcb.2017.8058527","mag":"2761741010"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2017.8058527","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2017.8058527","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112642889","display_name":"Li Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210129938","display_name":"Guangzhou Maritime College","ror":"https://ror.org/03kzcrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210129938"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Tan","raw_affiliation_strings":["School of Information and Communication Engineering, Guangzhou Maritime Institute, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information and Communication Engineering, Guangzhou Maritime Institute, Guangzhou, China","institution_ids":["https://openalex.org/I4210129938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100327194","display_name":"Jifeng Sun","orcid":"https://orcid.org/0000-0002-0201-8226"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jifeng Sun","raw_affiliation_strings":["School of Electronic and Information Engineering, South China University of Technology, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, South China University of Technology, Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"113","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.972599983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8118271827697754},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.762819230556488},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.7228603363037109},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.6539867520332336},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.5581400394439697},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46862533688545227},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.4566357433795929},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20541277527809143},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.07127583026885986}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8118271827697754},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.762819230556488},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.7228603363037109},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.6539867520332336},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.5581400394439697},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46862533688545227},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.4566357433795929},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20541277527809143},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.07127583026885986},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2017.8058527","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2017.8058527","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W153132339","https://openalex.org/W1496422306","https://openalex.org/W1510807444","https://openalex.org/W1965359119","https://openalex.org/W1996352193","https://openalex.org/W2010928148","https://openalex.org/W2032198782","https://openalex.org/W2034337154","https://openalex.org/W2057791956","https://openalex.org/W2085522429","https://openalex.org/W2092880969","https://openalex.org/W2096258819","https://openalex.org/W2105583187","https://openalex.org/W2108278098","https://openalex.org/W2111044311","https://openalex.org/W2116041602","https://openalex.org/W2131694312","https://openalex.org/W2138196010","https://openalex.org/W2146028503","https://openalex.org/W2157745386","https://openalex.org/W2159683766","https://openalex.org/W6606157611","https://openalex.org/W6629764630","https://openalex.org/W6630503602"],"related_works":["https://openalex.org/W2948148442","https://openalex.org/W2461250372","https://openalex.org/W2394342941","https://openalex.org/W2169853506","https://openalex.org/W2547124190","https://openalex.org/W2350586049","https://openalex.org/W2385628723","https://openalex.org/W2057878850","https://openalex.org/W2032414556","https://openalex.org/W2169871401"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3],"present":[4],"a":[5],"new":[6],"reference-free":[7],"and":[8,32,35],"lossless":[9],"approach":[10],"to":[11,41,66],"compress":[12],"next-generation":[13],"sequencing":[14],"(NGS)":[15],"data":[16,24],"in":[17],"FASTQ":[18,23],"format,":[19],"splitting":[20],"the":[21,57,67,71],"input":[22],"into":[25],"three":[26],"parts":[27],"of":[28,70],"metadata,":[29],"short":[30],"reads":[31],"quality":[33],"scores,":[34],"eliminating":[36],"their":[37,42],"redundancy":[38],"independently":[39],"according":[40],"own":[43],"characteristics.":[44],"Experiments":[45],"were":[46],"conducted":[47],"on":[48],"five":[49],"real-world":[50],"NGS":[51],"data.":[52],"The":[53],"results":[54],"show":[55],"that":[56],"proposed":[58],"algorithm":[59],"has":[60],"better":[61],"compression":[62,73],"gain":[63],"as":[64],"compared":[65],"previous":[68],"state":[69],"art":[72],"algorithms.":[74]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
