{"id":"https://openalex.org/W2561155279","doi":"https://doi.org/10.1109/cibcb.2016.7758105","title":"Well-connectedness - a novel measure for improving protein complex detection from PPI network","display_name":"Well-connectedness - a novel measure for improving protein complex detection from PPI network","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W2561155279","doi":"https://doi.org/10.1109/cibcb.2016.7758105","mag":"2561155279"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2016.7758105","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2016.7758105","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031824661","display_name":"Ananta Chowdhury","orcid":null},"institutions":[{"id":"https://openalex.org/I205746353","display_name":"University of Dhaka","ror":"https://ror.org/05wv2vq37","country_code":"BD","type":"education","lineage":["https://openalex.org/I205746353"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Ananta Chowdhury","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Dhaka, Bangladesh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Dhaka, Bangladesh","institution_ids":["https://openalex.org/I205746353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029649897","display_name":"Jessica Sharmin Rahman","orcid":"https://orcid.org/0000-0001-9930-241X"},"institutions":[{"id":"https://openalex.org/I205746353","display_name":"University of Dhaka","ror":"https://ror.org/05wv2vq37","country_code":"BD","type":"education","lineage":["https://openalex.org/I205746353"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Jessica Sharmin Rahman","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Dhaka, Bangladesh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Dhaka, Bangladesh","institution_ids":["https://openalex.org/I205746353"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038669496","display_name":"Md. Shiplu Hawlader","orcid":null},"institutions":[{"id":"https://openalex.org/I205746353","display_name":"University of Dhaka","ror":"https://ror.org/05wv2vq37","country_code":"BD","type":"education","lineage":["https://openalex.org/I205746353"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Md. Shiplu Hawlader","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Dhaka, Bangladesh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Dhaka, Bangladesh","institution_ids":["https://openalex.org/I205746353"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1741,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.65978416,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/social-connectedness","display_name":"Social connectedness","score":0.9419645071029663},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.7673513889312744},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.73664391040802},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6725127696990967},{"id":"https://openalex.org/keywords/similarity-measure","display_name":"Similarity measure","score":0.5649593472480774},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5390446186065674},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5352763533592224},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.5083624720573425},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4949039816856384},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.44566524028778076},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4181828796863556}],"concepts":[{"id":"https://openalex.org/C201943243","wikidata":"https://www.wikidata.org/wiki/Q7551008","display_name":"Social connectedness","level":2,"score":0.9419645071029663},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.7673513889312744},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.73664391040802},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6725127696990967},{"id":"https://openalex.org/C2776517306","wikidata":"https://www.wikidata.org/wiki/Q29017317","display_name":"Similarity measure","level":2,"score":0.5649593472480774},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5390446186065674},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5352763533592224},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.5083624720573425},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4949039816856384},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.44566524028778076},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4181828796863556},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb.2016.7758105","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2016.7758105","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"mag:2752915619","is_oa":false,"landing_page_url":"http://jglobal.jst.go.jp/en/public/20090422/201702219647830173","pdf_url":null,"source":{"id":"https://openalex.org/S4306512817","display_name":"IEEE Conference Proceedings","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"IEEE Conference Proceedings","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1783384641","https://openalex.org/W1965680834","https://openalex.org/W1986022261","https://openalex.org/W2021025020","https://openalex.org/W2050721857","https://openalex.org/W2082565035","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2121564430","https://openalex.org/W2136850043","https://openalex.org/W2137786672","https://openalex.org/W2140280811","https://openalex.org/W2159710443","https://openalex.org/W2163899891","https://openalex.org/W2171739259","https://openalex.org/W4236956086","https://openalex.org/W4255306344"],"related_works":["https://openalex.org/W2368605798","https://openalex.org/W2518037665","https://openalex.org/W2319693127","https://openalex.org/W2072263576","https://openalex.org/W2474567666","https://openalex.org/W2790658443","https://openalex.org/W1940044583","https://openalex.org/W2056226831","https://openalex.org/W2806903871","https://openalex.org/W4320802053"],"abstract_inverted_index":{"Recently,":[0],"protein":[1,43,72,77,88,111],"complex":[2,44,73,89],"prediction":[3,90],"via":[4],"computational":[5],"approaches":[6,21],"from":[7],"PPI":[8,48],"network":[9,49],"data":[10,98],"has":[11,100],"gained":[12],"significant":[13],"popularity":[14],"among":[15],"bioinformatics":[16],"researchers.":[17],"Majority":[18],"of":[19,41,67],"these":[20],"are":[22],"unsupervised.":[23],"The":[24],"quality":[25],"measures":[26,64],"they":[27],"use":[28],"to":[29,107],"guide":[30],"the":[31,39,47,65],"mining":[32],"process":[33],"have":[34,80],"some":[35],"drawbacks":[36],"in":[37,46,84],"reflecting":[38],"properties":[40],"a":[42,56,70,75],"presented":[45],"data.":[50],"In":[51],"this":[52],"paper,":[53],"we":[54],"propose":[55],"novel":[57],"measure,":[58],"named":[59],"well-connectedness.":[60],"It":[61],"more":[62,109],"accurately":[63],"similarity":[66],"interactions":[68],"between":[69],"mined":[71],"and":[74],"real":[76,96],"complex.":[78],"We":[79],"incorporated":[81],"well-connectedness":[82],"measure":[83,105],"two":[85],"state-of-the-art":[86],"overlapping":[87],"algorithms.":[91],"Empirical":[92],"analysis":[93],"on":[94],"four":[95],"world":[97],"sets":[99],"shown":[101],"that,":[102],"considering":[103],"our":[104],"enables":[106],"mine":[108],"meaningful":[110],"complexes.":[112]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
