{"id":"https://openalex.org/W1944236981","doi":"https://doi.org/10.1109/cibcb.2015.7300335","title":"On side effect machines as a representation for evolutionary algorithms","display_name":"On side effect machines as a representation for evolutionary algorithms","publication_year":2015,"publication_date":"2015-08-01","ids":{"openalex":"https://openalex.org/W1944236981","doi":"https://doi.org/10.1109/cibcb.2015.7300335","mag":"1944236981"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2015.7300335","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2015.7300335","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020474806","display_name":"Joseph Alexander Brown","orcid":"https://orcid.org/0000-0002-6513-4929"},"institutions":[{"id":"https://openalex.org/I4210116741","display_name":"Innopolis University","ror":"https://ror.org/02b7jh107","country_code":"RU","type":"education","lineage":["https://openalex.org/I4210116741"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Joseph Alexander Brown","raw_affiliation_strings":["Innopolis University, Kazan, Russia","Innopolis University Kazan, Republic of Tatarstan, Russia 420111"],"affiliations":[{"raw_affiliation_string":"Innopolis University, Kazan, Russia","institution_ids":["https://openalex.org/I4210116741"]},{"raw_affiliation_string":"Innopolis University Kazan, Republic of Tatarstan, Russia 420111","institution_ids":["https://openalex.org/I4210116741"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5020474806"],"corresponding_institution_ids":["https://openalex.org/I4210116741"],"apc_list":null,"apc_paid":null,"fwci":0.1459,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54478524,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/constructive","display_name":"Constructive","score":0.7379036545753479},{"id":"https://openalex.org/keywords/mathematical-proof","display_name":"Mathematical proof","score":0.7157789468765259},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.683158814907074},{"id":"https://openalex.org/keywords/formal-language","display_name":"Formal language","score":0.58623206615448},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5423068404197693},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.5352210998535156},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.5141041874885559},{"id":"https://openalex.org/keywords/formal-proof","display_name":"Formal proof","score":0.5078817009925842},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.4965692162513733},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.49134770035743713},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.44769585132598877},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.43166983127593994},{"id":"https://openalex.org/keywords/proof-assistant","display_name":"Proof assistant","score":0.4183940291404724},{"id":"https://openalex.org/keywords/statement","display_name":"Statement (logic)","score":0.4156908392906189},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38603243231773376},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27103835344314575},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10773345828056335}],"concepts":[{"id":"https://openalex.org/C2778701210","wikidata":"https://www.wikidata.org/wiki/Q28130034","display_name":"Constructive","level":3,"score":0.7379036545753479},{"id":"https://openalex.org/C108710211","wikidata":"https://www.wikidata.org/wiki/Q11538","display_name":"Mathematical proof","level":2,"score":0.7157789468765259},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.683158814907074},{"id":"https://openalex.org/C146072743","wikidata":"https://www.wikidata.org/wiki/Q192161","display_name":"Formal language","level":2,"score":0.58623206615448},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5423068404197693},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.5352210998535156},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.5141041874885559},{"id":"https://openalex.org/C94461902","wikidata":"https://www.wikidata.org/wiki/Q2762418","display_name":"Formal proof","level":3,"score":0.5078817009925842},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.4965692162513733},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.49134770035743713},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.44769585132598877},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.43166983127593994},{"id":"https://openalex.org/C203265346","wikidata":"https://www.wikidata.org/wiki/Q11387554","display_name":"Proof assistant","level":3,"score":0.4183940291404724},{"id":"https://openalex.org/C2777026412","wikidata":"https://www.wikidata.org/wiki/Q2684591","display_name":"Statement (logic)","level":2,"score":0.4156908392906189},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38603243231773376},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27103835344314575},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10773345828056335},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2015.7300335","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2015.7300335","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7099999785423279,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1506114985","https://openalex.org/W1515050065","https://openalex.org/W1570445666","https://openalex.org/W1974524840","https://openalex.org/W2012140001","https://openalex.org/W2017603160","https://openalex.org/W2020879581","https://openalex.org/W2023999667","https://openalex.org/W2031754607","https://openalex.org/W2046525322","https://openalex.org/W2047749542","https://openalex.org/W2054801208","https://openalex.org/W2056647002","https://openalex.org/W2057680553","https://openalex.org/W2065754412","https://openalex.org/W2075773711","https://openalex.org/W2075849239","https://openalex.org/W2076871417","https://openalex.org/W2085380703","https://openalex.org/W2094556532","https://openalex.org/W2124479173","https://openalex.org/W2157390113","https://openalex.org/W2160877678","https://openalex.org/W3215922478","https://openalex.org/W4211010176","https://openalex.org/W4285719527","https://openalex.org/W4302339081","https://openalex.org/W6630339116","https://openalex.org/W6630793027","https://openalex.org/W6634178965","https://openalex.org/W7030434499"],"related_works":["https://openalex.org/W4295798319","https://openalex.org/W1819460135","https://openalex.org/W4389158536","https://openalex.org/W4323929316","https://openalex.org/W1910466616","https://openalex.org/W2508333642","https://openalex.org/W3100311625","https://openalex.org/W187835144","https://openalex.org/W3099329863","https://openalex.org/W2099785256"],"abstract_inverted_index":{"Side":[0],"Effect":[1],"Machines":[2],"(SEMs)":[3],"have":[4],"been":[5,32,67],"used":[6,115],"as":[7],"a":[8,12,51,56,59,78,96,101,104,107],"evolutionary":[9],"representation":[10],"in":[11,38,83],"variety":[13],"of":[14,20,35,40,58,85,99,106,125],"studies":[15],"dealing":[16],"with":[17],"the":[18,36,47,86],"classification":[19],"data":[21],"for":[22,121],"bioinformatic":[23],"studies.":[24],"However,":[25],"up":[26],"to":[27,72,92,113,116],"this":[28],"point":[29],"there":[30],"has":[31,66],"no":[33],"formalism":[34],"SEM":[37,102],"terms":[39,84],"its":[41],"representational":[42],"ability":[43],"and":[44,109,127],"placement":[45],"within":[46],"Chomsky":[48],"hierarchy;":[49],"only":[50],"statement":[52],"that":[53,74],"it":[54],"is":[55,103],"generalization":[57,105],"Deterministic":[60],"Finite":[61],"Automation":[62],"(DFA),":[63],"without":[64],"proof,":[65],"provided.":[68,132],"This":[69],"paper":[70],"aims":[71],"rectify":[73],"situation":[75],"by":[76],"presenting":[77],"formal":[79],"look":[80],"at":[81],"SEMs":[82,122],"languages":[87,129],"which":[88],"they":[89],"are":[90,110,130],"known":[91],"accept.":[93],"We":[94],"give":[95],"constructive":[97],"proof":[98],"how":[100],"DFA":[108],"therefore":[111],"able":[112],"be":[114],"accept":[117],"languages.":[118],"Constructive":[119],"proofs":[120],"accepting":[123],"families":[124],"context-free":[126],"context-sensitive":[128],"also":[131]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}