{"id":"https://openalex.org/W1945725813","doi":"https://doi.org/10.1109/cibcb.2015.7300304","title":"Digitization of trait representation in microarray data analysis of wheat infected by fusarium graminearum","display_name":"Digitization of trait representation in microarray data analysis of wheat infected by fusarium graminearum","publication_year":2015,"publication_date":"2015-08-01","ids":{"openalex":"https://openalex.org/W1945725813","doi":"https://doi.org/10.1109/cibcb.2015.7300304","mag":"1945725813"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2015.7300304","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2015.7300304","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=d693562c-2969-4043-8478-aa78a3c142ba","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019868633","display_name":"Youlian Pan","orcid":"https://orcid.org/0000-0002-0158-0081"},"institutions":[{"id":"https://openalex.org/I4210151552","display_name":"Communications Research Centre Canada","ror":"https://ror.org/05dybt340","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210151552"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Youlian Pan","raw_affiliation_strings":["Information and Communications Technologies, NRC, Ottawa, ON, Canada","Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada"],"affiliations":[{"raw_affiliation_string":"Information and Communications Technologies, NRC, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I4210151552"]},{"raw_affiliation_string":"Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada","institution_ids":["https://openalex.org/I4210151552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063175531","display_name":"Th\u00e9r\u00e8se Ouellet","orcid":"https://orcid.org/0000-0002-6380-9806"},"institutions":[{"id":"https://openalex.org/I4390039273","display_name":"Ottawa Research and Development Centre","ror":"https://ror.org/03fx3ra47","country_code":null,"type":"facility","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613","https://openalex.org/I4390039273"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Therese Ouellet","raw_affiliation_strings":["Eastern Cereal and Oilseed Research Centre, AAFC, Ottawa, ON, Canada","Eastern Cereal and Oilseed Research Centre, AAFC, 960 Carling Ave, Ottawa, ON, K1A0C6 Canada"],"affiliations":[{"raw_affiliation_string":"Eastern Cereal and Oilseed Research Centre, AAFC, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I4390039273"]},{"raw_affiliation_string":"Eastern Cereal and Oilseed Research Centre, AAFC, 960 Carling Ave, Ottawa, ON, K1A0C6 Canada","institution_ids":["https://openalex.org/I4390039273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113496151","display_name":"Sieu Phan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151552","display_name":"Communications Research Centre Canada","ror":"https://ror.org/05dybt340","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210151552"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sieu Phan","raw_affiliation_strings":["Information and Communications Technologies, NRC, Ottawa, ON, Canada","Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada"],"affiliations":[{"raw_affiliation_string":"Information and Communications Technologies, NRC, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I4210151552"]},{"raw_affiliation_string":"Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada","institution_ids":["https://openalex.org/I4210151552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066354389","display_name":"Alain Tchagang","orcid":"https://orcid.org/0000-0001-8619-9441"},"institutions":[{"id":"https://openalex.org/I4210151552","display_name":"Communications Research Centre Canada","ror":"https://ror.org/05dybt340","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210151552"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alain Tchagang","raw_affiliation_strings":["Information and Communications Technologies, NRC, Ottawa, ON, Canada","Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada"],"affiliations":[{"raw_affiliation_string":"Information and Communications Technologies, NRC, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I4210151552"]},{"raw_affiliation_string":"Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada","institution_ids":["https://openalex.org/I4210151552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033747263","display_name":"Fran\u00e7ois Fauteux","orcid":"https://orcid.org/0000-0003-0085-7322"},"institutions":[{"id":"https://openalex.org/I4210151552","display_name":"Communications Research Centre Canada","ror":"https://ror.org/05dybt340","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210151552"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Francois Fauteux","raw_affiliation_strings":["Information and Communications Technologies, NRC, Ottawa, ON, Canada","Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada"],"affiliations":[{"raw_affiliation_string":"Information and Communications Technologies, NRC, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I4210151552"]},{"raw_affiliation_string":"Information and Communications Technologies, NRC, 1200 Montreal Road, Ottawa, ON, K1A0R6 Canada","institution_ids":["https://openalex.org/I4210151552"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005286348","display_name":"Dan Tulpan","orcid":"https://orcid.org/0000-0003-1100-646X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dan Tulpan","raw_affiliation_strings":["Information and Communications Technologies, NRC, Moncton, NB, Canada","Information and Communications Technologies, NRC, 100 des Aboiteaux Street, Moncton, NB, E1A7R1 Canada"],"affiliations":[{"raw_affiliation_string":"Information and Communications Technologies, NRC, Moncton, NB, Canada","institution_ids":[]},{"raw_affiliation_string":"Information and Communications Technologies, NRC, 100 des Aboiteaux Street, Moncton, NB, E1A7R1 Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019868633"],"corresponding_institution_ids":["https://openalex.org/I4210151552"],"apc_list":null,"apc_paid":null,"fwci":0.5137,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.7720813,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10520","display_name":"Mycotoxins in Agriculture and Food","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10520","display_name":"Mycotoxins in Agriculture and Food","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fusarium","display_name":"Fusarium","score":0.8721250891685486},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.798775315284729},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6011383533477783},{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.5525901317596436},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.5407325029373169},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5152547955513},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4922851622104645},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4594261646270752},{"id":"https://openalex.org/keywords/trait","display_name":"Trait","score":0.45574474334716797},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3344387412071228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07270541787147522}],"concepts":[{"id":"https://openalex.org/C2778867309","wikidata":"https://www.wikidata.org/wiki/Q131672","display_name":"Fusarium","level":2,"score":0.8721250891685486},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.798775315284729},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6011383533477783},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.5525901317596436},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.5407325029373169},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5152547955513},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4922851622104645},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4594261646270752},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.45574474334716797},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3344387412071228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07270541787147522},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb.2015.7300304","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2015.7300304","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:21277074","is_oa":true,"landing_page_url":"https://nrc-publications.canada.ca/eng/view/object/?id=d693562c-2969-4043-8478-aa78a3c142ba","pdf_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=d693562c-2969-4043-8478-aa78a3c142ba","source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:21277074","is_oa":true,"landing_page_url":"https://nrc-publications.canada.ca/eng/view/object/?id=d693562c-2969-4043-8478-aa78a3c142ba","pdf_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=d693562c-2969-4043-8478-aa78a3c142ba","source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1945725813.pdf","grobid_xml":"https://content.openalex.org/works/W1945725813.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W25587163","https://openalex.org/W153531287","https://openalex.org/W1539528380","https://openalex.org/W1802263562","https://openalex.org/W1964025617","https://openalex.org/W1966327575","https://openalex.org/W1996685003","https://openalex.org/W2021160670","https://openalex.org/W2035759078","https://openalex.org/W2055253076","https://openalex.org/W2058415552","https://openalex.org/W2068979057","https://openalex.org/W2075717637","https://openalex.org/W2082232137","https://openalex.org/W2084188388","https://openalex.org/W2091407273","https://openalex.org/W2091723965","https://openalex.org/W2094111863","https://openalex.org/W2098566726","https://openalex.org/W2099170054","https://openalex.org/W2100899690","https://openalex.org/W2109210813","https://openalex.org/W2121758748","https://openalex.org/W2125350345","https://openalex.org/W2125603035","https://openalex.org/W2132034375","https://openalex.org/W2137531873","https://openalex.org/W2137539916","https://openalex.org/W2146112868","https://openalex.org/W2146512944","https://openalex.org/W2149892712","https://openalex.org/W2158603418","https://openalex.org/W2170989872","https://openalex.org/W2800289289","https://openalex.org/W3142733604","https://openalex.org/W7008958825"],"related_works":["https://openalex.org/W2041540252","https://openalex.org/W2796636403","https://openalex.org/W2415545834","https://openalex.org/W1547158732","https://openalex.org/W3203113381","https://openalex.org/W2366558827","https://openalex.org/W170658859","https://openalex.org/W1483316219","https://openalex.org/W4310366902","https://openalex.org/W3023720143"],"abstract_inverted_index":{"Fusarium":[0,33,107],"head":[1],"blight":[2],"(FHB)":[3],"limits":[4],"wheat":[5,23,43,123],"yield":[6],"and":[7,20,35,52,56,77,119],"compromises":[8],"grain":[9],"quality.":[10],"We":[11,45,67,85,109],"investigated":[12],"differentially":[13],"expressed":[14],"genes":[15,91,114],"after":[16],"FHB":[17,117],"challenge.":[18],"FHB-susceptible":[19],"-resistant":[21],"common":[22],"(Triticum":[24],"aestivum)":[25],"cultivars":[26],"were":[27],"challenged":[28],"with":[29,55,96,122],"the":[30,50,58,83],"toxigenic":[31],"fungus":[32],"graminearum":[34],"gene":[36,73],"expression":[37,74],"was":[38],"analyzed":[39],"using":[40],"61K":[41],"Affymetrix":[42],"microarrays.":[44],"digitized":[46],"trait":[47,101],"specificity":[48],"in":[49,60,80,92],"susceptible":[51,76],"resistant":[53,78],"lines":[54,79],"without":[57],"infection":[59,118],"order":[61],"to":[62,82,104,106,116,125,132],"facilitate":[63],"subsequent":[64],"data":[65],"mining.":[66],"discovered":[68],"various":[69],"patterns":[70],"of":[71],"differential":[72],"between":[75],"response":[81],"infection.":[84],"performed":[86],"association":[87],"network":[88],"analysis":[89],"among":[90,127],"clusters":[93],"significantly":[94,120],"correlated":[95,121],"one":[97],"or":[98],"more":[99],"quantitative":[100],"loci":[102],"known":[103],"contribute":[105],"resistance.":[108],"found":[110],"11":[111],"interconnected":[112],"hub":[113],"responsive":[115],"resistance":[124],"FHB,":[126],"which":[128],"two":[129],"are":[130],"predicted":[131],"encode":[133],"a":[134],"polygalacturonase-inhibiting":[135],"protein":[136],"(PGIP1).":[137]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
