{"id":"https://openalex.org/W1956890918","doi":"https://doi.org/10.1109/cibcb.2015.7300300","title":"An information extraction system for protein function prediction","display_name":"An information extraction system for protein function prediction","publication_year":2015,"publication_date":"2015-08-01","ids":{"openalex":"https://openalex.org/W1956890918","doi":"https://doi.org/10.1109/cibcb.2015.7300300","mag":"1956890918"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2015.7300300","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2015.7300300","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074032096","display_name":"Kamal Taha","orcid":"https://orcid.org/0000-0002-6674-4614"},"institutions":[{"id":"https://openalex.org/I176601375","display_name":"Khalifa University of Science and Technology","ror":"https://ror.org/05hffr360","country_code":"AE","type":"education","lineage":["https://openalex.org/I176601375"]}],"countries":["AE"],"is_corresponding":true,"raw_author_name":"Kamal Taha","raw_affiliation_strings":["Electrical and Computer Engineering Department, Khalifa University, UAE","Electrical and Computer Engineering Department, Khalifa University, UAE#TAB#"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, Khalifa University, UAE","institution_ids":["https://openalex.org/I176601375"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, Khalifa University, UAE#TAB#","institution_ids":["https://openalex.org/I176601375"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014443986","display_name":"Paul D. Yoo","orcid":"https://orcid.org/0000-0001-7665-8616"},"institutions":[{"id":"https://openalex.org/I9300472","display_name":"Bournemouth University","ror":"https://ror.org/05wwcw481","country_code":"GB","type":"education","lineage":["https://openalex.org/I9300472"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul D. Yoo","raw_affiliation_strings":["Faculty of Science and Technology, Bournemouth University, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Faculty of Science and Technology, Bournemouth University, United Kingdom","institution_ids":["https://openalex.org/I9300472"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074032096"],"corresponding_institution_ids":["https://openalex.org/I176601375"],"apc_list":null,"apc_paid":null,"fwci":0.1459,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54519647,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"38","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7382107973098755},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6733949184417725},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6680665612220764},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5752522945404053},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5234519839286804},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.47264164686203003},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4612194001674652},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4449743330478668},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.44337376952171326},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.27822524309158325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13196220993995667}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7382107973098755},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6733949184417725},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6680665612220764},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5752522945404053},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5234519839286804},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.47264164686203003},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4612194001674652},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4449743330478668},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.44337376952171326},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.27822524309158325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13196220993995667},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2015.7300300","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2015.7300300","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8399999737739563,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W108101778","https://openalex.org/W1504124766","https://openalex.org/W1576273202","https://openalex.org/W1954715867","https://openalex.org/W1992801565","https://openalex.org/W1999117234","https://openalex.org/W2015574703","https://openalex.org/W2049346142","https://openalex.org/W2049670271","https://openalex.org/W2050824831","https://openalex.org/W2073921708","https://openalex.org/W2104768328","https://openalex.org/W2123796147","https://openalex.org/W2141274067","https://openalex.org/W2145211186","https://openalex.org/W2153416351","https://openalex.org/W2155770859","https://openalex.org/W2161062388","https://openalex.org/W2170206653","https://openalex.org/W2201542680","https://openalex.org/W2493438438","https://openalex.org/W2911588602","https://openalex.org/W3089319657","https://openalex.org/W4233290938","https://openalex.org/W4239403073","https://openalex.org/W6640904281","https://openalex.org/W6649991593","https://openalex.org/W6662810576","https://openalex.org/W6687634207","https://openalex.org/W6783763832"],"related_works":["https://openalex.org/W3004288456","https://openalex.org/W4362496998","https://openalex.org/W2184397297","https://openalex.org/W2368651715","https://openalex.org/W1663435917","https://openalex.org/W2810079151","https://openalex.org/W2616159224","https://openalex.org/W2572241437","https://openalex.org/W2103320915","https://openalex.org/W3092715749"],"abstract_inverted_index":{"We":[0,165],"present":[1],"a":[2,76,103,113],"Natural":[3],"Language":[4],"Processing":[5],"extraction":[6,79],"system":[7,59],"called":[8],"IESforPFP,":[9,96],"which":[10],"can":[11,51],"retrieve":[12],"useful":[13],"information":[14,83],"from":[15,47,84],"biomedical":[16,48,118],"abstracts.":[17],"IESforPFP":[18,50,137,170],"aims":[19],"at":[20],"enhancing":[21],"the":[22,25,53,61,93,110,117,128,131,139,159,167],"state":[23],"of":[24,27,41,55,88,95,105,112,130,141,161,169],"art":[26],"biological":[28],"text":[29],"mining":[30],"by":[31,102,150,171],"applying":[32],"novel":[33,71],"linguistic":[34],"computational":[35],"technique.":[36],"By":[37],"retrieving":[38],"significant":[39],"patterns":[40],"associations":[42],"between":[43,64,133],"proteins":[44,143],"and":[45,135],"molecules":[46],"abstracts,":[49],"determine":[52],"functions":[54,160],"un-annotated":[56],"proteins.":[57,164],"The":[58],"determines":[60,138],"semantic":[62,72,77],"relationship":[63,78],"each":[65,97,125],"protein-molecule":[66],"pair":[67],"in":[68,90,116],"sentences":[69],"using":[70],"rules.":[73],"It":[74,154],"applies":[75],"model":[80],"that":[81,144],"retrieves":[82],"different":[85],"structural":[86],"forms":[87],"constituents":[89],"sentences.":[91],"In":[92],"framework":[94],"protein":[98],"p":[99,149,157],"is":[100,145],"represented":[101],"vector":[104],"weights.":[106],"Each":[107],"weight":[108,126],"reflects":[109],"significance":[111],"molecule":[114],"m":[115,134],"abstracts":[119],"associated":[120],"with":[121,158,175],"p.":[122,136],"That":[123],"is,":[124],"quantifies":[127],"likelihood":[129],"association":[132],"set":[140],"annotated":[142,163],"semantically":[146],"similar":[147],"to":[148],"comparing":[151,172],"their":[152],"vectors.":[153],"then":[155],"annotates":[156],"these":[162],"evaluated":[166],"quality":[168],"it":[173],"experimentally":[174],"two":[176],"other":[177],"systems.":[178],"Results":[179],"showed":[180],"marked":[181],"improvement.":[182]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}