{"id":"https://openalex.org/W1964315675","doi":"https://doi.org/10.1109/cibcb.2014.6845516","title":"MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds","display_name":"MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds","publication_year":2014,"publication_date":"2014-05-01","ids":{"openalex":"https://openalex.org/W1964315675","doi":"https://doi.org/10.1109/cibcb.2014.6845516","mag":"1964315675"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2014.6845516","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2014.6845516","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069094618","display_name":"Niels W. Hanson","orcid":"https://orcid.org/0000-0003-3081-0736"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Niels W. Hanson","raw_affiliation_strings":["Graduate Program in Bioinformatics, University of British Columbia, Canada","Grad. Program in Bioinf., Univ. of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Graduate Program in Bioinformatics, University of British Columbia, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Grad. Program in Bioinf., Univ. of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035678865","display_name":"Kishori M. Konwar","orcid":"https://orcid.org/0000-0001-5152-4777"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kishori M. Konwar","raw_affiliation_strings":["Department of Microbiology & Immunology, University of British Columbia, Canada","Dept. of Microbiol. & Immunology, Univ. of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology & Immunology, University of British Columbia, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Microbiol. & Immunology, Univ. of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014522958","display_name":"Shang\u2010Ju Wu","orcid":"https://orcid.org/0000-0002-0772-869X"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shang-Ju Wu","raw_affiliation_strings":["Department of Microbiology & Immunology, University of British Columbia, Canada","Dept. of Microbiol. & Immunology, Univ. of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology & Immunology, University of British Columbia, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Microbiol. & Immunology, Univ. of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101411528","display_name":"Steven Hallam","orcid":"https://orcid.org/0000-0002-4889-6876"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Steven J. Hallam","raw_affiliation_strings":["Department of Microbiology & Immunology, University of British Columbia, Canada","Dept. of Microbiol. & Immunology, Univ. of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology & Immunology, University of British Columbia, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Microbiol. & Immunology, Univ. of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069094618"],"corresponding_institution_ids":["https://openalex.org/I141945490"],"apc_list":null,"apc_paid":null,"fwci":14.6471,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.98651785,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"323","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.779526948928833},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5294972062110901},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.47425761818885803},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4738484025001526},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.46913430094718933},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4629197418689728},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4484621286392212},{"id":"https://openalex.org/keywords/asynchronous-communication","display_name":"Asynchronous communication","score":0.4387321174144745},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.4344395101070404},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3470945954322815},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20968642830848694},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12150847911834717},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.09732115268707275}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.779526948928833},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5294972062110901},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.47425761818885803},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4738484025001526},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.46913430094718933},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4629197418689728},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4484621286392212},{"id":"https://openalex.org/C151319957","wikidata":"https://www.wikidata.org/wiki/Q752739","display_name":"Asynchronous communication","level":2,"score":0.4387321174144745},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4344395101070404},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3470945954322815},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20968642830848694},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12150847911834717},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.09732115268707275},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2014.6845516","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2014.6845516","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320314000","display_name":"Compute Canada","ror":"https://ror.org/03ty8yr27"},{"id":"https://openalex.org/F4320315065","display_name":"Tula Foundation","ror":"https://ror.org/0029jxk29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1485293642","https://openalex.org/W1615183486","https://openalex.org/W1734546775","https://openalex.org/W1980527196","https://openalex.org/W1989348205","https://openalex.org/W1996047071","https://openalex.org/W2004548026","https://openalex.org/W2040890279","https://openalex.org/W2066656905","https://openalex.org/W2077210509","https://openalex.org/W2103363198","https://openalex.org/W2113035722","https://openalex.org/W2116895571","https://openalex.org/W2123134606","https://openalex.org/W2142678031","https://openalex.org/W2158714788","https://openalex.org/W2158784643","https://openalex.org/W2159482845","https://openalex.org/W2162758337","https://openalex.org/W2168465568","https://openalex.org/W2169929748","https://openalex.org/W4294216483","https://openalex.org/W6677004025"],"related_works":["https://openalex.org/W3180179400","https://openalex.org/W2118366689","https://openalex.org/W2154998455","https://openalex.org/W2116888309","https://openalex.org/W2477652530","https://openalex.org/W2039055059","https://openalex.org/W2381088774","https://openalex.org/W963721989","https://openalex.org/W2183494409","https://openalex.org/W3121870801"],"abstract_inverted_index":{"The":[0,28,119],"development":[1],"of":[2,15,22,31,75,162,182],"high-throughput":[3],"sequencing":[4,38],"technologies":[5],"over":[6],"the":[7,77,180,189],"past":[8],"decade":[9],"has":[10,40],"generated":[11],"a":[12,20,58,86,109,139,160],"tidal":[13],"wave":[14],"environmental":[16,66,71],"sequence":[17,72],"information":[18,32,73],"from":[19,70,159],"variety":[21],"natural":[23],"and":[24,36,61,89,114,128,131,136],"human":[25],"engineered":[26],"ecosystems.":[27],"resulting":[29],"flood":[30],"into":[33],"public":[34],"databases":[35],"archived":[37],"projects":[39],"exponentially":[41],"expanded":[42],"computational":[43,157],"resource":[44,83],"requirements":[45],"rendering":[46],"most":[47],"local":[48],"homology-based":[49],"search":[50],"methods":[51],"inefficient.":[52],"We":[53],"recently":[54],"introduced":[55,93],"MetaPathways":[56,106,120],"v1.0,":[57],"modular":[59],"annotation":[60],"analysis":[62],"pipeline":[63],"for":[64,81,126,150],"constructing":[65],"Pathway/Genome":[67],"Databases":[68],"(ePGDBs)":[69],"capable":[74],"using":[76],"Sun":[78],"Grid":[79],"engine":[80],"external":[82],"partitioning.":[84],"However,":[85],"command-line":[87],"interface":[88,112],"facile":[90],"task":[91,116,151],"management":[92,117,152],"user":[94,111],"activation":[95],"barriers":[96],"with":[97],"concomitant":[98],"decrease":[99],"in":[100,165],"fault":[101,175],"tolerance.":[102,176],"Here":[103],"we":[104],"present":[105],"v2.0":[107],"incorporating":[108],"graphical":[110],"(GUI)":[113],"refined":[115],"methods.":[118],"GUI":[121],"provides":[122],"an":[123,166],"intuitive":[124],"display":[125],"setup":[127],"process":[129],"monitoring":[130],"supports":[132],"interactive":[133],"data":[134,143],"visualization":[135],"sub-setting":[137],"via":[138],"custom":[140],"Knowledge":[141],"Engine":[142],"structure.":[144],"A":[145],"master-worker":[146],"model":[147,178],"is":[148],"adopted":[149],"allowing":[153],"users":[154],"to":[155,188],"scavenge":[156],"results":[158],"number":[161],"worker":[163],"grids":[164],"ad":[167],"hoc,":[168],"asynchronous,":[169],"distributed":[170],"network":[171],"that":[172],"dramatically":[173],"increases":[174],"This":[177],"facilitates":[179],"use":[181],"EC2":[183],"instances":[184],"extending":[185],"ePGDB":[186],"construction":[187],"Amazon":[190],"Elastic":[191],"Cloud.":[192]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":8}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
