{"id":"https://openalex.org/W2171783446","doi":"https://doi.org/10.1109/cibcb.2013.6595396","title":"Reverse engineering of gene regulation models from multi-condition experiments","display_name":"Reverse engineering of gene regulation models from multi-condition experiments","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2171783446","doi":"https://doi.org/10.1109/cibcb.2013.6595396","mag":"2171783446"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2013.6595396","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2013.6595396","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pure.ulster.ac.uk/en/publications/52608d68-fbac-4288-b514-dcfbdda8e056","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016476060","display_name":"Noel Kennedy","orcid":null},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Noel Kennedy","raw_affiliation_strings":["University of Ulster, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ulster, Ireland","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057608588","display_name":"Alexandru Eugeniu Mizeranschi","orcid":"https://orcid.org/0000-0002-1168-6285"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexandru Mizeranschi","raw_affiliation_strings":["University of Ulster, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ulster, Ireland","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101419324","display_name":"Paul D. Thompson","orcid":"https://orcid.org/0000-0002-0365-2149"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Thompson","raw_affiliation_strings":["University of Ulster, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ulster, Ireland","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024401909","display_name":"Huiru Zheng","orcid":"https://orcid.org/0000-0001-7648-8709"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Huiru Zheng","raw_affiliation_strings":["University of Ulster, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ulster, Ireland","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011609464","display_name":"Werner Dubitzky","orcid":null},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Werner Dubitzky","raw_affiliation_strings":["University of Ulster, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Ulster, Ireland","institution_ids":["https://openalex.org/I138801177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I138801177"],"apc_list":null,"apc_paid":null,"fwci":6.1516,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.96287601,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"43","issue":null,"first_page":"112","last_page":"119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.8316981792449951},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7337090373039246},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.711881160736084},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6253315210342407},{"id":"https://openalex.org/keywords/particle-swarm-optimization","display_name":"Particle swarm optimization","score":0.5938788652420044},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47353479266166687},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4608971178531647},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.45244309306144714},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4234270751476288},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40213942527770996},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37534284591674805},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14810830354690552},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14585384726524353},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09102115035057068}],"concepts":[{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.8316981792449951},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7337090373039246},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.711881160736084},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6253315210342407},{"id":"https://openalex.org/C85617194","wikidata":"https://www.wikidata.org/wiki/Q2072794","display_name":"Particle swarm optimization","level":2,"score":0.5938788652420044},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47353479266166687},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4608971178531647},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.45244309306144714},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4234270751476288},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40213942527770996},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37534284591674805},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14810830354690552},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14585384726524353},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09102115035057068},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/cibcb.2013.6595396","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2013.6595396","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:publications/52608d68-fbac-4288-b514-dcfbdda8e056","is_oa":true,"landing_page_url":"https://pure.ulster.ac.uk/en/publications/52608d68-fbac-4288-b514-dcfbdda8e056","pdf_url":null,"source":{"id":"https://openalex.org/S4306402454","display_name":"Ulster University Research Portal (Ulster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138801177","host_organization_name":"University of Ulster","host_organization_lineage":["https://openalex.org/I138801177"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mizeranschi , A , Thompson , P , Zheng , H &amp; Dubitzky , W 2013 , Reverse-engineering of gene regulation models from multi-condition experiments . in Unknown Host Publication . IEEE , pp. 112-119 , IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) , 1/04/13 .","raw_type":"contributionToPeriodical"},{"id":"pmh:oai:zenodo.org:3430262","is_oa":true,"landing_page_url":"https://zenodo.org/record/3430262","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:publications/52608d68-fbac-4288-b514-dcfbdda8e056","is_oa":true,"landing_page_url":"https://pure.ulster.ac.uk/en/publications/52608d68-fbac-4288-b514-dcfbdda8e056","pdf_url":null,"source":{"id":"https://openalex.org/S4306402454","display_name":"Ulster University Research Portal (Ulster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138801177","host_organization_name":"University of Ulster","host_organization_lineage":["https://openalex.org/I138801177"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mizeranschi , A , Thompson , P , Zheng , H &amp; Dubitzky , W 2013 , Reverse-engineering of gene regulation models from multi-condition experiments . in Unknown Host Publication . IEEE , pp. 112-119 , IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) , 1/04/13 .","raw_type":"contributionToPeriodical"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W91944956","https://openalex.org/W1132197713","https://openalex.org/W1482637285","https://openalex.org/W1570117993","https://openalex.org/W1573033592","https://openalex.org/W1587411234","https://openalex.org/W1621540022","https://openalex.org/W1631749243","https://openalex.org/W1744598653","https://openalex.org/W1972129511","https://openalex.org/W1996264210","https://openalex.org/W2006005484","https://openalex.org/W2012139697","https://openalex.org/W2051959027","https://openalex.org/W2059093945","https://openalex.org/W2061851611","https://openalex.org/W2062029454","https://openalex.org/W2101322239","https://openalex.org/W2101571511","https://openalex.org/W2102305597","https://openalex.org/W2102653059","https://openalex.org/W2108675631","https://openalex.org/W2109364787","https://openalex.org/W2120748206","https://openalex.org/W2121785831","https://openalex.org/W2137474062","https://openalex.org/W2140277449","https://openalex.org/W2141592092","https://openalex.org/W2153355914","https://openalex.org/W2156454518","https://openalex.org/W2158449659","https://openalex.org/W2163296862","https://openalex.org/W2182025195","https://openalex.org/W4236687379","https://openalex.org/W6627168715","https://openalex.org/W6635177048","https://openalex.org/W6637895863"],"related_works":["https://openalex.org/W2363831530","https://openalex.org/W2363845219","https://openalex.org/W2381057835","https://openalex.org/W1789649838","https://openalex.org/W1780668307","https://openalex.org/W1984362519","https://openalex.org/W2051831113","https://openalex.org/W2650054517","https://openalex.org/W2362738525","https://openalex.org/W2106927126"],"abstract_inverted_index":{"Reverse-engineering":[0],"of":[1,38,42,72],"quantitative,":[2],"dynamic":[3],"gene-regulatory":[4],"network":[5],"(GRN)":[6],"models":[7,47,76],"from":[8,77],"time-series":[9],"gene":[10],"expression":[11],"data":[12,18],"is":[13,34],"becoming":[14],"important":[15,85],"as":[16],"such":[17],"are":[19],"increasingly":[20],"generated":[21],"for":[22],"research":[23],"and":[24,51,92],"other":[25],"purposes.":[26],"A":[27],"key":[28],"problem":[29],"in":[30],"the":[31,35,44],"reverse-engineering":[32],"process":[33],"under-determined":[36],"nature":[37],"these":[39],"data.":[40],"Because":[41],"this,":[43],"reverse-engineered":[45],"GRN":[46,75,79],"often":[48],"lack":[49],"robustness":[50],"perform":[52],"poorly":[53],"when":[54],"used":[55],"to":[56,60],"simulate":[57],"system":[58],"responses":[59],"new":[61],"conditions.":[62],"In":[63],"this":[64],"study,":[65],"we":[66],"present":[67],"a":[68],"novel":[69],"method":[70],"capable":[71],"inferring":[73],"robust":[74],"multi-condition":[78],"experiments.":[80],"This":[81],"study":[82],"uses":[83],"two":[84],"computational":[86],"intelligence":[87],"methods:":[88],"artificial":[89],"neural":[90],"networks":[91],"particle":[93],"swarm":[94],"optimization.":[95]},"counts_by_year":[{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}
