{"id":"https://openalex.org/W2083734620","doi":"https://doi.org/10.1109/cibcb.2012.6217219","title":"Robust integrated framework for effective feature selection and sample classification and its application to gene expression data analysis","display_name":"Robust integrated framework for effective feature selection and sample classification and its application to gene expression data analysis","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W2083734620","doi":"https://doi.org/10.1109/cibcb.2012.6217219","mag":"2083734620"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2012.6217219","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2012.6217219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008929449","display_name":"Shang Gao","orcid":"https://orcid.org/0000-0002-2947-7780"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shang Gao","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Alberta, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088599356","display_name":"Omar Addam","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Omar Addam","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Alberta, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005554705","display_name":"Ala Qabaja","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ala Qabaja","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Alberta, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111911977","display_name":"Abdallah M. ElSheikh","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Abdallah ElSheikh","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Alberta, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035034994","display_name":"Omar Zarour","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Omar Zarour","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Alberta, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051512120","display_name":"Mohamad Nagi","orcid":null},"institutions":[{"id":"https://openalex.org/I139894009","display_name":"University of Bradford","ror":"https://ror.org/00vs8d940","country_code":"GB","type":"education","lineage":["https://openalex.org/I139894009"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mohamad Nagi","raw_affiliation_strings":["School of Computing, University of Bradford, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing, University of Bradford, UK","institution_ids":["https://openalex.org/I139894009"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073908534","display_name":"Flouris Triant","orcid":null},"institutions":[{"id":"https://openalex.org/I25055547","display_name":"Hellenic American University","ror":"https://ror.org/0423r3m86","country_code":"US","type":"education","lineage":["https://openalex.org/I25055547"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Flouris Triant","raw_affiliation_strings":["Department of Information Technology, Hellenic American University, Manchester, NH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Hellenic American University, Manchester, NH, USA","institution_ids":["https://openalex.org/I25055547"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033391055","display_name":"Wadhah Almansoori","orcid":null},"institutions":[{"id":"https://openalex.org/I126859394","display_name":"Alberta Health Services","ror":"https://ror.org/02nt5es71","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I126859394"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wadhah Almansoori","raw_affiliation_strings":["EMS, Alberta Health Services, Calgary, 1632 14 Avenue N.W., Canada"],"affiliations":[{"raw_affiliation_string":"EMS, Alberta Health Services, Calgary, 1632 14 Avenue N.W., Canada","institution_ids":["https://openalex.org/I126859394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097694805","display_name":"Omer \u015eair Tansel \u00d6zyer","orcid":null},"institutions":[{"id":"https://openalex.org/I13236232","display_name":"TOBB University of Economics and Technology","ror":"https://ror.org/03ewx7v96","country_code":"TR","type":"education","lineage":["https://openalex.org/I13236232"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Omer \u015eair Tansel \u00d6zyer","raw_affiliation_strings":["Department of Computer Engineering, TOBB University, Ankara, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, TOBB University, Ankara, Turkey","institution_ids":["https://openalex.org/I13236232"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103032322","display_name":"Jia Zeng","orcid":"https://orcid.org/0000-0002-9447-2791"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jia Zeng","raw_affiliation_strings":["Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA"],"affiliations":[{"raw_affiliation_string":"Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA","institution_ids":["https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020310155","display_name":"Jon Rokne","orcid":"https://orcid.org/0000-0002-3439-2917"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jon Rokne","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Alberta, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075339534","display_name":"Reda Alhajja","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Reda Alhajja","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Alberta, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Alberta, Canada#TAB#","institution_ids":["https://openalex.org/I168635309"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5008929449"],"corresponding_institution_ids":["https://openalex.org/I168635309"],"apc_list":null,"apc_paid":null,"fwci":0.6567,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.68202526,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":null,"first_page":"112","last_page":"119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7154269218444824},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6647101640701294},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.6343635320663452},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6020222902297974},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5878772735595703},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5311725735664368},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5074710249900818},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5051258206367493},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.49713924527168274},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35488513112068176}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7154269218444824},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6647101640701294},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.6343635320663452},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6020222902297974},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5878772735595703},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5311725735664368},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5074710249900818},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5051258206367493},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.49713924527168274},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35488513112068176}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2012.6217219","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2012.6217219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W72465559","https://openalex.org/W1517993545","https://openalex.org/W1585743408","https://openalex.org/W1714373868","https://openalex.org/W1988078905","https://openalex.org/W2007176121","https://openalex.org/W2008906462","https://openalex.org/W2010313905","https://openalex.org/W2046661787","https://openalex.org/W2066201825","https://openalex.org/W2079479637","https://openalex.org/W2087684630","https://openalex.org/W2090091537","https://openalex.org/W2105260718","https://openalex.org/W2108728387","https://openalex.org/W2109363337","https://openalex.org/W2121587014","https://openalex.org/W2123128887","https://openalex.org/W2133111499","https://openalex.org/W2138512826","https://openalex.org/W2139736926","https://openalex.org/W2140703956","https://openalex.org/W2143977157","https://openalex.org/W2155461849","https://openalex.org/W2159116014","https://openalex.org/W2159400887","https://openalex.org/W2170112109","https://openalex.org/W2170798597","https://openalex.org/W2171108171","https://openalex.org/W2287897145","https://openalex.org/W2500661033","https://openalex.org/W2544258000","https://openalex.org/W3201444869","https://openalex.org/W4236354166","https://openalex.org/W4244638854","https://openalex.org/W6635046684","https://openalex.org/W6652261155","https://openalex.org/W6724006661","https://openalex.org/W6801407141"],"related_works":["https://openalex.org/W1995622179","https://openalex.org/W1484111231","https://openalex.org/W1552543208","https://openalex.org/W2074396517","https://openalex.org/W2166963679","https://openalex.org/W2187269125","https://openalex.org/W20047544","https://openalex.org/W1641615907","https://openalex.org/W3089231081","https://openalex.org/W2093956241"],"abstract_inverted_index":{"Genes":[0],"are":[1,17],"encoding":[2],"regions":[3],"that":[4,108],"form":[5],"essential":[6,154],"building":[7],"block":[8],"within":[9],"the":[10,110,114,129,147,151,158,181,204,235,242,276,281],"cell":[11],"and":[12,33,76,119,133,172,200,221,226,257,278],"lead":[13,196],"to":[14,28,55,65,79,155,179,197],"proteins":[15],"which":[16,189],"achieving":[18],"various":[19,40],"functions.":[20],"However,":[21],"some":[22],"genes":[23,68,132],"may":[24],"be":[25,46],"mutated":[26,67],"due":[27],"internal":[29],"or":[30,92,184],"external":[31],"factors":[32],"this":[34,98,101],"is":[35,63,153,166,178,239,263],"a":[36,81,105,167],"main":[37],"cause":[38],"for":[39,146,160,192,265,271],"diseases.":[41],"The":[42,94,176,232,268],"latter":[43],"case":[44],"could":[45],"discovered":[47],"by":[48,103,245],"closely":[49],"examining":[50],"samples":[51,78,89,137,159],"taken":[52],"from":[53,216,223,229],"patients":[54],"identify":[56,66],"faulty":[57],"genes.":[58],"In":[59,122],"other":[60],"words,":[61],"it":[62],"important":[64],"as":[69,90,142],"disease":[70],"biomarkers.":[71],"Then":[72],"consider":[73],"certain":[74],"normal":[75],"infected":[77,91],"build":[80],"classifier":[82],"model":[83],"capable":[84],"of":[85,113,128,131,136,187,234,280],"successfully":[86],"classifying":[87],"new":[88],"normal.":[93],"work":[95],"described":[96],"in":[97,126,241],"paper":[99],"addresses":[100],"problem":[102],"introducing":[104],"comprehensive":[106],"framework":[107],"incorporates":[109],"two":[111],"stages":[112],"process,":[115],"namely":[116,214,251],"feature":[117,170,211,236],"selection":[118,171,212],"sample":[120],"classification.":[121],"fact,":[123],"high":[124],"dimensionality":[125,152],"terms":[127],"number":[130,135],"small":[134],"distinguishes":[138],"gene":[139],"expression":[140],"data":[141,224],"an":[143],"ideal":[144],"application":[145],"proposed":[148,282],"framework.":[149,283],"Reducing":[150],"efficiently":[156],"analysis":[157],"effective":[161],"knowledge":[162,193],"discovery.":[163],"Actually,":[164],"there":[165],"tradeoff":[168],"between":[169],"maintaining":[173],"acceptable":[174,201],"accuracy.":[175,202],"target":[177],"find":[180],"reduction":[182,237],"level":[183],"compact":[185],"set":[186],"features":[188],"once":[190],"used":[191],"discovery":[194],"will":[195],"improved":[198],"performance":[199],"For":[203],"first":[205],"stage,":[206],"we":[207],"concentrate":[208],"on":[209],"four":[210,272],"techniques,":[213,250],"chi-square":[215],"statistics,":[217],"frequent":[218],"pattern":[219],"mining":[220],"clustering":[222],"mining,":[225],"community":[227],"detection":[228],"network":[230],"analysis.":[231],"effectiveness":[233,279],"techniques":[238],"demonstrated":[240],"second":[243],"stage":[244],"coupling":[246],"them":[247],"with":[248],"classification":[249],"associative":[252],"classification,":[253],"support":[254],"vector":[255],"machine":[256],"naive":[258],"Bayesian":[259],"classifier.":[260],"Majority":[261],"voting":[262],"applied":[264],"both":[266],"stages.":[267],"results":[269],"reported":[270],"cancer":[273],"datasets":[274],"demonstrate":[275],"applicability":[277]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
