{"id":"https://openalex.org/W1978632766","doi":"https://doi.org/10.1109/cibcb.2012.6217215","title":"An ontology design methodology for Knowledge-Based systems with application to bioinformatics","display_name":"An ontology design methodology for Knowledge-Based systems with application to bioinformatics","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W1978632766","doi":"https://doi.org/10.1109/cibcb.2012.6217215","mag":"1978632766"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2012.6217215","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2012.6217215","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027676813","display_name":"Antonino Fiannaca","orcid":"https://orcid.org/0000-0002-0114-4984"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"A. Fiannaca","raw_affiliation_strings":["Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052997301","display_name":"Massimo La Rosa","orcid":"https://orcid.org/0000-0001-6718-7269"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"M. La Rosa","raw_affiliation_strings":["Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011731694","display_name":"Riccardo Rizzo","orcid":"https://orcid.org/0000-0001-5007-6925"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Rizzo","raw_affiliation_strings":["Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015541058","display_name":"Alfonso Urso","orcid":"https://orcid.org/0000-0003-3018-1458"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfonso Urso","raw_affiliation_strings":["Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Riccardo Rizzo. Alfonso Urso ICAR-CNR, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046377602","display_name":"Salvatore Gaglio","orcid":"https://orcid.org/0000-0002-5480-2100"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Salvatore Gaglio","raw_affiliation_strings":["DICGIM, University of Palermo, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DICGIM, University of Palermo, Palermo, Italy","institution_ids":["https://openalex.org/I900890020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"1","issue":null,"first_page":"85","last_page":"91"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9635999798774719,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7662690877914429},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7016136646270752},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4229298233985901},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32436269521713257},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0924740731716156}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7662690877914429},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7016136646270752},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4229298233985901},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32436269521713257},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0924740731716156},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb.2012.6217215","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2012.6217215","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:iris.unipa.it:10447/74857","is_oa":false,"landing_page_url":"http://hdl.handle.net/10447/74857","pdf_url":null,"source":{"id":"https://openalex.org/S4306401065","display_name":"Nova Science Publishers (Nova Science Publishers, Inc.)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W173026241","https://openalex.org/W292123658","https://openalex.org/W1487060125","https://openalex.org/W1500778093","https://openalex.org/W1510794891","https://openalex.org/W1533454883","https://openalex.org/W1539141881","https://openalex.org/W1562643504","https://openalex.org/W1580832589","https://openalex.org/W1593902710","https://openalex.org/W2068308602","https://openalex.org/W2075879397","https://openalex.org/W2076655956","https://openalex.org/W2077797310","https://openalex.org/W2078759647","https://openalex.org/W2087371659","https://openalex.org/W2098740506","https://openalex.org/W2100944365","https://openalex.org/W2103103282","https://openalex.org/W2119359534","https://openalex.org/W2121564430","https://openalex.org/W2121991709","https://openalex.org/W2126536832","https://openalex.org/W2130479394","https://openalex.org/W2136850043","https://openalex.org/W2137079713","https://openalex.org/W2137653635","https://openalex.org/W2137914315","https://openalex.org/W2138003801","https://openalex.org/W2140251863","https://openalex.org/W2155142785","https://openalex.org/W2163485494","https://openalex.org/W2166957636","https://openalex.org/W2402755124","https://openalex.org/W2410080759","https://openalex.org/W4285719527","https://openalex.org/W6602415463","https://openalex.org/W6635475891","https://openalex.org/W6678320747","https://openalex.org/W6680564603","https://openalex.org/W6712717467","https://openalex.org/W7028615529"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Ontologies":[0],"are":[1],"formal":[2],"knowledge":[3,33,52,127],"representation":[4],"models.":[5],"Knowledge":[6,40],"organization":[7],"is":[8,96,120],"a":[9,26,39,54,129,138],"fundamental":[10],"requirement":[11],"in":[12],"order":[13],"to":[14,35,56,61,67,73,97,122],"develop":[15],"Knowledge-Based":[16],"systems.":[17,45],"In":[18],"this":[19],"paper":[20],"we":[21],"present":[22],"Data-Problem-Solver":[23],"(DPS)":[24],"approach,":[25],"new":[27],"ontological":[28,118],"paradigm":[29,95],"that":[30],"allows":[31],"the":[32,51,59,64,71,77,84,93,99,102,106,109,112,123,126,133],"designer":[34],"model":[36],"and":[37,76,105,108],"represent":[38],"Base":[41],"(KB)":[42],"for":[43],"expert":[44],"Our":[46],"approach":[47,119],"clearly":[48],"distinguishes":[49],"among":[50],"about":[53,128],"problem":[55],"resolve":[57,68],"(answering":[58,70,83],"\u201cwhat":[60,85],"do\u201d":[62,74],"question),":[63],"solver":[65],"method":[66],"it":[69],"\u201chow":[72],"question)":[75],"type":[78],"of":[79,92,101,111,125],"input":[80],"data":[81],"required":[82],"I":[86],"need\u201d":[87],"question).":[88],"The":[89,115],"main":[90],"purpose":[91],"proposed":[94,116],"facilitate":[98],"generalization":[100],"application":[103,131],"domain":[104],"modularity":[107],"expandability":[110],"represented":[113],"knowledge.":[114],"DPS":[117],"applied":[121],"modelling":[124],"bioinformatics":[130],"scenario:":[132],"protein":[134],"complex":[135],"extraction":[136],"from":[137],"protein-protein":[139],"interaction":[140],"network.":[141]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
