{"id":"https://openalex.org/W2083986568","doi":"https://doi.org/10.1109/cibcb.2012.6217207","title":"Combining genetic oscillators and switches using evolutionary algorithms","display_name":"Combining genetic oscillators and switches using evolutionary algorithms","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W2083986568","doi":"https://doi.org/10.1109/cibcb.2012.6217207","mag":"2083986568"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2012.6217207","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2012.6217207","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025580494","display_name":"Spencer A. Thomas","orcid":"https://orcid.org/0000-0002-9260-1561"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Spencer Angus Thomas","raw_affiliation_strings":["Department of Computing, University of Surrey, Guildford, Surrey, UK","Department of Computing, University of Surrey, Guildford GU2 7XH, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Computing, University of Surrey, Guildford, Surrey, UK","institution_ids":["https://openalex.org/I28290843"]},{"raw_affiliation_string":"Department of Computing, University of Surrey, Guildford GU2 7XH, United Kingdom","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032314861","display_name":"Yaochu Jin","orcid":"https://orcid.org/0000-0003-1100-0631"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yaochu Jin","raw_affiliation_strings":["Department of Computing, University of Surrey, Guildford, Surrey, UK","Department of Computing, University of Surrey, Guildford GU2 7XH, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Computing, University of Surrey, Guildford, Surrey, UK","institution_ids":["https://openalex.org/I28290843"]},{"raw_affiliation_string":"Department of Computing, University of Surrey, Guildford GU2 7XH, United Kingdom","institution_ids":["https://openalex.org/I28290843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5025580494"],"corresponding_institution_ids":["https://openalex.org/I28290843"],"apc_list":null,"apc_paid":null,"fwci":0.788,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.70951688,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"1","issue":null,"first_page":"28","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.729067325592041},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7070103287696838},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6288617849349976},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.576911449432373},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5657704472541809},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.4397461712360382},{"id":"https://openalex.org/keywords/complex-system","display_name":"Complex system","score":0.426509827375412},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3656781017780304},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3537285625934601},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35008519887924194},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.17675668001174927}],"concepts":[{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.729067325592041},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7070103287696838},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6288617849349976},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.576911449432373},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5657704472541809},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.4397461712360382},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.426509827375412},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3656781017780304},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3537285625934601},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35008519887924194},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.17675668001174927},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/cibcb.2012.6217207","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2012.6217207","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:alma.44SUR_INST:11139816920002346","is_oa":false,"landing_page_url":"http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6210991","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"event"},{"id":"pmh:oai:epubs.surrey.ac.uk:835634","is_oa":false,"landing_page_url":"http://epubs.surrey.ac.uk/835634/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400680","display_name":"Surrey Research Insight Open Access (The University of Surrey)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28290843","host_organization_name":"University of Surrey","host_organization_lineage":["https://openalex.org/I28290843"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference or Workshop Item"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321979","display_name":"University of Surrey","ror":"https://ror.org/00ks66431"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W38710637","https://openalex.org/W206440355","https://openalex.org/W985433685","https://openalex.org/W1551836412","https://openalex.org/W1576660662","https://openalex.org/W1599969036","https://openalex.org/W1911278511","https://openalex.org/W1971231926","https://openalex.org/W1979594391","https://openalex.org/W2001018770","https://openalex.org/W2034786923","https://openalex.org/W2039670869","https://openalex.org/W2043004358","https://openalex.org/W2046300633","https://openalex.org/W2051497876","https://openalex.org/W2061425021","https://openalex.org/W2070743664","https://openalex.org/W2079173805","https://openalex.org/W2110794675","https://openalex.org/W2111818118","https://openalex.org/W2114111541","https://openalex.org/W2144636407","https://openalex.org/W2147852085","https://openalex.org/W2153624566","https://openalex.org/W2155174683","https://openalex.org/W2163694327","https://openalex.org/W2170685771","https://openalex.org/W6676794193"],"related_works":["https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W4300101996","https://openalex.org/W2165950148","https://openalex.org/W4253593777","https://openalex.org/W2951497643","https://openalex.org/W4403053866","https://openalex.org/W2142393343","https://openalex.org/W2338854850"],"abstract_inverted_index":{"It":[0],"is":[1,123],"hypothesised":[2],"that":[3,110],"complex":[4,80,112],"biological":[5,23],"gene":[6],"regulatory":[7,51],"networks":[8,14,93],"can":[9,65,130],"be":[10,66,131],"evolved":[11,78],"from":[12],"simple":[13,50,117],"through":[15],"modularisation,":[16],"duplication":[17],"and":[18,30,56,90,126,136],"specialisation":[19],"processes.":[20],"However,":[21],"the":[22,88,101,140],"mechanisms":[24,122],"of":[25,72,116,139],"this":[26,38],"process":[27],"remain":[28],"elusive":[29],"little":[31],"work":[32],"has":[33],"been":[34],"done":[35],"to":[36,47],"verify":[37],"hypothesis":[39],"in":[40,94],"a":[41,69,95],"computational":[42,70],"environment.":[43],"This":[44],"paper":[45],"aims":[46],"couple":[48],"two":[49,83],"motifs,":[52],"one":[53,57],"toggle":[54,91],"switch":[55,92],"self-sustained":[58],"oscillator":[59,89],"using":[60,119],"an":[61,134],"evolutionary":[62,121],"algorithm,":[63],"which":[64,99,129],"seen":[67,132],"as":[68,133],"simulation":[71],"natural":[73],"evolution.":[74],"We":[75],"have":[76],"successfully":[77],"several":[79],"dynamics":[81,113],"for":[82],"different":[84],"connections":[85],"arrangements":[86],"between":[87],"master/slave":[96],"set":[97],"up,":[98],"confirms":[100],"previously":[102],"reported":[103],"results":[104,108],"achieved":[105],"manually.":[106],"Our":[107],"indicate":[109],"generating":[111],"by":[114],"coupling":[115],"motifs":[118],"simulated":[120],"methodologically":[124],"feasible":[125],"more":[127],"efficient,":[128],"indirect":[135],"partial":[137],"verification":[138],"above":[141],"hypothesis.":[142]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
