{"id":"https://openalex.org/W2136689299","doi":"https://doi.org/10.1109/cibcb.2011.5948467","title":"Utilization of gene ontology in semi-supervised clustering","display_name":"Utilization of gene ontology in semi-supervised clustering","publication_year":2011,"publication_date":"2011-04-01","ids":{"openalex":"https://openalex.org/W2136689299","doi":"https://doi.org/10.1109/cibcb.2011.5948467","mag":"2136689299"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2011.5948467","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948467","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=64227bbc-8d1f-44dc-9447-0bfcde158fd8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089332203","display_name":"Duong D. Doan","orcid":null},"institutions":[{"id":"https://openalex.org/I106938459","display_name":"University of New Brunswick","ror":"https://ror.org/05nkf0n29","country_code":"CA","type":"education","lineage":["https://openalex.org/I106938459"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Duong D. Doan","raw_affiliation_strings":["Faculty of Computer Science, University of New Brunswick, Fredericton, NB, Canada","Faculty of Computer Science, University of New Brunswick, 540 Windsor Street, Fredericton, Canada"],"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, University of New Brunswick, Fredericton, NB, Canada","institution_ids":["https://openalex.org/I106938459"]},{"raw_affiliation_string":"Faculty of Computer Science, University of New Brunswick, 540 Windsor Street, Fredericton, Canada","institution_ids":["https://openalex.org/I106938459"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101549955","display_name":"Yunli Wang","orcid":"https://orcid.org/0000-0002-2320-954X"},"institutions":[{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Yunli Wang","raw_affiliation_strings":["Institute of Information Technology, National Research Council Canada, Fredericton, NB, Canada","Institute for Information Technology, National Research Council Canada, 46 Dineen Drive, Fredericton, NB, Canada"],"affiliations":[{"raw_affiliation_string":"Institute of Information Technology, National Research Council Canada, Fredericton, NB, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Institute for Information Technology, National Research Council Canada, 46 Dineen Drive, Fredericton, NB, Canada","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019868633","display_name":"Youlian Pan","orcid":"https://orcid.org/0000-0002-0158-0081"},"institutions":[{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Youlian Pan","raw_affiliation_strings":["Institute of Information Technology, National Research Council Canada, Ottawa, ONT, Canada","Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada"],"affiliations":[{"raw_affiliation_string":"Institute of Information Technology, National Research Council Canada, Ottawa, ONT, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada","institution_ids":["https://openalex.org/I197604219"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5089332203"],"corresponding_institution_ids":["https://openalex.org/I106938459"],"apc_list":null,"apc_paid":null,"fwci":0.1328,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.54126596,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8202617764472961},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6789436340332031},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.6217811107635498},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.4968457520008087},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4693544805049896},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4656807780265808},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4506164789199829},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43585556745529175},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41689053177833557},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15046057105064392},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07499164342880249}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8202617764472961},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6789436340332031},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.6217811107635498},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4968457520008087},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4693544805049896},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4656807780265808},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4506164789199829},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43585556745529175},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41689053177833557},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15046057105064392},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07499164342880249},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb.2011.5948467","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948467","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:16931690","is_oa":true,"landing_page_url":"https://nrc-publications.canada.ca/fra/voir/objet/?id=64227bbc-8d1f-44dc-9447-0bfcde158fd8","pdf_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=64227bbc-8d1f-44dc-9447-0bfcde158fd8","source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:16931690","is_oa":true,"landing_page_url":"https://nrc-publications.canada.ca/fra/voir/objet/?id=64227bbc-8d1f-44dc-9447-0bfcde158fd8","pdf_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=64227bbc-8d1f-44dc-9447-0bfcde158fd8","source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2136689299.pdf","grobid_xml":"https://content.openalex.org/works/W2136689299.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1019147482","https://openalex.org/W1567012231","https://openalex.org/W2010447185","https://openalex.org/W2061554433","https://openalex.org/W2062953127","https://openalex.org/W2074948691","https://openalex.org/W2080498142","https://openalex.org/W2082232137","https://openalex.org/W2091723965","https://openalex.org/W2096100960","https://openalex.org/W2097577460","https://openalex.org/W2103453943","https://openalex.org/W2110595429","https://openalex.org/W2129804226","https://openalex.org/W2137683543","https://openalex.org/W2146914454","https://openalex.org/W2162165991","https://openalex.org/W2761554372","https://openalex.org/W4229617587"],"related_works":["https://openalex.org/W2365264209","https://openalex.org/W962203960","https://openalex.org/W2026999166","https://openalex.org/W2085384747","https://openalex.org/W1599954583","https://openalex.org/W2088166309","https://openalex.org/W1996802783","https://openalex.org/W2509431957","https://openalex.org/W4211007821","https://openalex.org/W2794019507"],"abstract_inverted_index":{"Semi-supervised":[0],"clustering":[1,52,78,138,155],"incorporating":[2],"biological":[3],"relevance":[4],"as":[5],"a":[6,23],"prior":[7,19,27,81,105,118,133,145],"knowledge":[8,20,28,82,106,119,134,146],"has":[9,21],"been":[10,22],"favored":[11],"over":[12],"the":[13,48,63,68,112,121,125,142,153],"past":[14],"decade.":[15],"However,":[16],"selection":[17],"of":[18,37,50,53,70,87,96,132],"challenge.":[24],"We":[25,61],"generate":[26],"from":[29,84,108,120],"Gene":[30],"Ontology":[31],"(GO)":[32],"terms":[33,73,99],"at":[34],"different":[35],"levels":[36,86,110],"GO":[38,72,88,98,113,126],"hierarchy":[39,89,114],"and":[40,59,67,74,93,100,141],"use":[41],"them":[42],"to":[43],"study":[44],"their":[45],"impact":[46],"on":[47],"performance":[49,64],"subsequent":[51],"microarray":[54],"data":[55],"by":[56,65],"using":[57],"MPCKMeans":[58,103],"GOFuzzy.":[60],"evaluate":[62],"F-measure":[66,92],"number":[69,95],"specific":[71,97,144],"transcription":[75,101],"factors.":[76,102],"The":[77],"result":[79,139],"with":[80,104,117],"generated":[83,107],"lower":[85],"have":[90],"higher":[91],"more":[94,143,149],"multiple":[109],"in":[111,124,151],"outperforms":[115],"GOFuzzy":[116],"first":[122],"level":[123],"hierarchy.":[127],"A":[128],"small":[129],"amount":[130],"(1-2%)":[131],"can":[135],"improve":[136],"semi-supervised":[137,154],"substantially":[140],"is":[147],"generally":[148],"efficient":[150],"guiding":[152],"process.":[156]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
