{"id":"https://openalex.org/W2148270905","doi":"https://doi.org/10.1109/cibcb.2011.5948465","title":"A simulation of bacterial communities","display_name":"A simulation of bacterial communities","publication_year":2011,"publication_date":"2011-04-01","ids":{"openalex":"https://openalex.org/W2148270905","doi":"https://doi.org/10.1109/cibcb.2011.5948465","mag":"2148270905"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2011.5948465","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948465","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080870632","display_name":"Daniel Ashlock","orcid":"https://orcid.org/0000-0003-2209-7504"},"institutions":[{"id":"https://openalex.org/I79817857","display_name":"University of Guelph","ror":"https://ror.org/01r7awg59","country_code":"CA","type":"education","lineage":["https://openalex.org/I79817857"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Daniel Ashlock","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Guelph, Guelph, ONT, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Guelph, Guelph, ONT, Canada","institution_ids":["https://openalex.org/I79817857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016876202","display_name":"Andrew McEachern","orcid":null},"institutions":[{"id":"https://openalex.org/I79817857","display_name":"University of Guelph","ror":"https://ror.org/01r7awg59","country_code":"CA","type":"education","lineage":["https://openalex.org/I79817857"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew McEachern","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Guelph, Guelph, ONT, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Guelph, Guelph, ONT, Canada","institution_ids":["https://openalex.org/I79817857"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5080870632"],"corresponding_institution_ids":["https://openalex.org/I79817857"],"apc_list":null,"apc_paid":null,"fwci":1.8363,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.90424751,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"7","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.7180098295211792},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6442322731018066},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5667146444320679},{"id":"https://openalex.org/keywords/bacterial-colony","display_name":"Bacterial colony","score":0.5029885172843933},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4772465229034424},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4388951063156128},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3711773753166199},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.34549421072006226},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.3361584544181824},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33513960242271423},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3331148028373718},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25685256719589233},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09772276878356934},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08707302808761597}],"concepts":[{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.7180098295211792},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6442322731018066},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5667146444320679},{"id":"https://openalex.org/C2994463342","wikidata":"https://www.wikidata.org/wiki/Q354341","display_name":"Bacterial colony","level":3,"score":0.5029885172843933},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4772465229034424},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4388951063156128},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3711773753166199},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.34549421072006226},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3361584544181824},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33513960242271423},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3331148028373718},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25685256719589233},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09772276878356934},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08707302808761597},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2011.5948465","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948465","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1584380365","https://openalex.org/W1900149929","https://openalex.org/W2002160484","https://openalex.org/W2078586104","https://openalex.org/W2088745130","https://openalex.org/W2092648379","https://openalex.org/W2097571405","https://openalex.org/W2098128271","https://openalex.org/W2101181144","https://openalex.org/W2121418733","https://openalex.org/W2122914162","https://openalex.org/W2125196454","https://openalex.org/W2126580421","https://openalex.org/W2129786343","https://openalex.org/W2136095090","https://openalex.org/W2136911907","https://openalex.org/W2137015804","https://openalex.org/W2137674267","https://openalex.org/W2143383970","https://openalex.org/W2153683423","https://openalex.org/W2157583390","https://openalex.org/W2158253172","https://openalex.org/W2164789569","https://openalex.org/W2307344796","https://openalex.org/W4238621995"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W2464304476","https://openalex.org/W4306842392","https://openalex.org/W1995564306","https://openalex.org/W3161744906"],"abstract_inverted_index":{"This":[0],"study":[1],"constructs":[2],"and":[3,120],"tests":[4],"an":[5],"agent-based":[6],"model":[7],"of":[8,14,21,31,37,46,62,99,141,152,185],"bacterial":[9,100,118,130,133,154],"communities":[10,57],"with":[11,90,96,115,128],"the":[12,16,19,33,41,44,78,103,122,158,172,183],"goal":[13],"modeling":[15],"observation":[17],"that":[18,53,59,163,174],"majority":[20],"bacteria":[22,54,68,175],"in":[23,67,73,102,126,137,165],"nature":[24,166],"cannot":[25],"be":[26,178],"cultured.":[27],"The":[28,49,105,150],"new":[29,76],"field":[30],"metagenomics,":[32],"direct,":[34],"mass":[35],"sequencing":[36],"DNA":[38],"recovered":[39,156],"from":[40,157],"environment,":[42],"is":[43,52,81,110,124,160],"source":[45],"this":[47,88],"observation.":[48],"hypothesis":[50,123,173],"tested":[51,125],"form":[55],"interdependent":[56],"so":[58],"viable":[60],"levels":[61],"energy":[63,85,106],"production":[64],"are":[65,71,94,135],"rare":[66],"when":[69],"they":[70,181],"grown":[72],"monoculture.":[74],"A":[75],"game,":[77],"metabolism":[79],"game":[80,89],"introduced.":[82],"Agents":[83],"produce":[84],"by":[86,112],"playing":[87],"one":[91],"another.":[92],"Studies":[93],"run":[95],"different":[97],"number":[98],"species":[101,119,134],"simulation.":[104],"level":[107],"for":[108],"viability":[109],"set":[111],"running":[113],"simulations":[114,127],"a":[116,138,146],"single":[117],"then":[121],"multiple":[129,147],"species.":[131,187],"Multiple":[132],"evolved":[136],"novel":[139],"type":[140],"multi-population":[142],"evolutionary":[143],"algorithm":[144],"called":[145],"worlds":[148],"algorithm.":[149],"fraction":[151],"culturable":[153,179],"agents":[155],"simulation":[159],"larger":[161],"than":[162],"found":[164],"but":[167],"still":[168],"quite":[169],"low,":[170],"supporting":[171],"may":[176],"not":[177],"because":[180],"require":[182],"presence":[184],"partner":[186]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
