{"id":"https://openalex.org/W2124157117","doi":"https://doi.org/10.1109/cibcb.2011.5948454","title":"Predicting coding region candidates in the DNA sequence based on visualization without training","display_name":"Predicting coding region candidates in the DNA sequence based on visualization without training","publication_year":2011,"publication_date":"2011-04-01","ids":{"openalex":"https://openalex.org/W2124157117","doi":"https://doi.org/10.1109/cibcb.2011.5948454","mag":"2124157117"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2011.5948454","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948454","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100427385","display_name":"Bo Chen","orcid":"https://orcid.org/0000-0002-9099-6248"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Bo Chen","raw_affiliation_strings":["Department of Industrial and Systems Engineering, Hong Kong Polytechnic University, Hong Kong, China","Department of Industrial and Systems engineering, The Hong Kong Polytechnic University, China"],"affiliations":[{"raw_affiliation_string":"Department of Industrial and Systems Engineering, Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Department of Industrial and Systems engineering, The Hong Kong Polytechnic University, China","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072080566","display_name":"Ping Ji","orcid":"https://orcid.org/0000-0002-7841-6677"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ping Ji","raw_affiliation_strings":["Department of Industrial and Systems Engineering, Hong Kong Polytechnic University, Hong Kong, China","Department of Industrial and Systems engineering, The Hong Kong Polytechnic University, China"],"affiliations":[{"raw_affiliation_string":"Department of Industrial and Systems Engineering, Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Department of Industrial and Systems engineering, The Hong Kong Polytechnic University, China","institution_ids":["https://openalex.org/I14243506"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100427385"],"corresponding_institution_ids":["https://openalex.org/I14243506"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1224969,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"18","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.722690224647522},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7077953815460205},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7006034255027771},{"id":"https://openalex.org/keywords/adaptability","display_name":"Adaptability","score":0.5543290972709656},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.46577972173690796},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4354196786880493},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42360636591911316},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3623213768005371},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33603715896606445},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3258954882621765},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11919313669204712},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10593006014823914},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08030098676681519},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07950177788734436}],"concepts":[{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.722690224647522},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7077953815460205},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7006034255027771},{"id":"https://openalex.org/C177606310","wikidata":"https://www.wikidata.org/wiki/Q5674297","display_name":"Adaptability","level":2,"score":0.5543290972709656},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.46577972173690796},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4354196786880493},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42360636591911316},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3623213768005371},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33603715896606445},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3258954882621765},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11919313669204712},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10593006014823914},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08030098676681519},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07950177788734436},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cibcb.2011.5948454","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948454","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/18863","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/18863","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322598","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1603411458","https://openalex.org/W1621040003","https://openalex.org/W1975165872","https://openalex.org/W1976804192","https://openalex.org/W1980213704","https://openalex.org/W1992396120","https://openalex.org/W2004069887","https://openalex.org/W2007006108","https://openalex.org/W2021020563","https://openalex.org/W2024213282","https://openalex.org/W2026237951","https://openalex.org/W2032870665","https://openalex.org/W2035522779","https://openalex.org/W2039680623","https://openalex.org/W2051709495","https://openalex.org/W2052503008","https://openalex.org/W2057953526","https://openalex.org/W2072072728","https://openalex.org/W2078756642","https://openalex.org/W2090965696","https://openalex.org/W2092952428","https://openalex.org/W2103919457","https://openalex.org/W2112140923","https://openalex.org/W2117445034","https://openalex.org/W2122999324","https://openalex.org/W2127095472","https://openalex.org/W2135120651","https://openalex.org/W2135768017","https://openalex.org/W2137761415","https://openalex.org/W2138472839","https://openalex.org/W2141572089","https://openalex.org/W2155387468","https://openalex.org/W2166187656","https://openalex.org/W2213701196","https://openalex.org/W2496051004","https://openalex.org/W4245003757"],"related_works":["https://openalex.org/W2357124094","https://openalex.org/W2387399993","https://openalex.org/W2389739210","https://openalex.org/W2348924972","https://openalex.org/W2365736347","https://openalex.org/W2047454415","https://openalex.org/W2070040999","https://openalex.org/W2387293848","https://openalex.org/W2250140200","https://openalex.org/W2080473508"],"abstract_inverted_index":{"Identifying":[0],"the":[1,6,24,37,44,91,115,123,128,172],"protein":[2],"coding":[3,25,102,124,168],"regions":[4,26],"in":[5,13,22,76,81,127,171],"DNA":[7,129],"sequence":[8],"is":[9,87,97,147,150],"an":[10,164],"active":[11],"issue":[12],"computational":[14],"biology.":[15],"Presently,":[16],"there":[17],"are":[18],"many":[19],"outstanding":[20],"methods":[21],"predicting":[23],"with":[27,53,154],"extreme":[28],"high":[29],"accuracy,":[30],"after":[31],"conducting":[32],"preceding":[33],"training":[34,38,57,137],"process.":[35],"However,":[36],"dependence":[39],"may":[40],"reduce":[41],"adaptability":[42],"of":[43,122],"methods,":[45],"particularly":[46],"for":[47,167],"new":[48,155],"sequences":[49,156],"from":[50,157],"unknown":[51,158],"organisms":[52],"no":[54],"or":[55],"small":[56],"sets.":[58],"In":[59],"this":[60],"paper,":[61],"we":[62,107],"firstly":[63],"present":[64],"a":[65,77,98,109,119],"Self":[66],"Adaptive":[67],"Spectral":[68],"Rotation":[69],"(SASR)":[70],"approach,":[71],"which":[72,96],"was":[73],"first":[74],"introduced":[75],"previous":[78],"work":[79,142],"published":[80],"Nucleic":[82],"Acids":[83],"Research.":[84],"This":[85,131],"approach":[86,132],"adopted":[88],"to":[89,112],"visualize":[90],"Triplet":[92],"Periodicity":[93],"(TP)":[94],"property,":[95],"simple":[99],"and":[100,117],"universal":[101],"related":[103],"property.":[104],"After":[105],"that,":[106],"use":[108],"segmentation":[110],"technique":[111],"computationally":[113],"analyze":[114],"visualization":[116],"provide":[118],"numerical":[120],"prediction":[121,170],"region":[125,169],"candidates":[126],"sequence.":[130],"does":[133],"not":[134],"require":[135],"any":[136,144],"process,":[138],"so":[139],"it":[140,161],"can":[141],"before":[143],"extra":[145],"information":[146],"available,":[148],"especially":[149],"helpful":[151],"when":[152],"dealing":[153],"organisms.":[159],"Hence,":[160],"could":[162],"be":[163],"efficient":[165],"tool":[166],"early":[173],"stage":[174],"study.":[175]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
