{"id":"https://openalex.org/W1980130378","doi":"https://doi.org/10.1109/cibcb.2010.5510589","title":"Towards a temporal modeling of the genetic network controlling Systemic Acquired Resistance in Arabidopsis thaliana","display_name":"Towards a temporal modeling of the genetic network controlling Systemic Acquired Resistance in Arabidopsis thaliana","publication_year":2010,"publication_date":"2010-05-01","ids":{"openalex":"https://openalex.org/W1980130378","doi":"https://doi.org/10.1109/cibcb.2010.5510589","mag":"1980130378"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2010.5510589","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2010.5510589","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=0a781464-afcc-445b-8641-add274937326","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066354389","display_name":"Alain Tchagang","orcid":"https://orcid.org/0000-0001-8619-9441"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]}],"countries":["CA","US"],"is_corresponding":true,"raw_author_name":"Alain B. Tchagang","raw_affiliation_strings":["Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada"],"affiliations":[{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076695220","display_name":"Heather L. Shearer","orcid":"https://orcid.org/0000-0001-8191-7723"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210097499","display_name":"Plant Biotechnology Institute","ror":"https://ror.org/00qed5764","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210097499","https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Heather Shearer","raw_affiliation_strings":["Plant Biotechnology Institute of the National Research Council Canada, Saskatoom, Canada","Plant Biotechnology Institute of the National Research Council Canada, 110 Gymnasium Place, Saskatoom, SK S7N 0W9, Canada"],"affiliations":[{"raw_affiliation_string":"Plant Biotechnology Institute of the National Research Council Canada, Saskatoom, Canada","institution_ids":["https://openalex.org/I4210097499","https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Plant Biotechnology Institute of the National Research Council Canada, 110 Gymnasium Place, Saskatoom, SK S7N 0W9, Canada","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113496151","display_name":"Sieu Phan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Sieu Phan","raw_affiliation_strings":["Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada"],"affiliations":[{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014506447","display_name":"Hugo B\u00e9rub\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Hugo Berube","raw_affiliation_strings":["Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada"],"affiliations":[{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014709314","display_name":"Fazel Famili","orcid":null},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Fazel Famili","raw_affiliation_strings":["Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada"],"affiliations":[{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090002706","display_name":"Pierre R. Fobert","orcid":"https://orcid.org/0000-0001-9397-7539"},"institutions":[{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Pierre Fobert","raw_affiliation_strings":["Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","Plant Biotechnology Institute of the National Research Council Canada, 110 Gymnasium Place, Saskatoom, SK S7N 0W9, Canada"],"affiliations":[{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Plant Biotechnology Institute of the National Research Council Canada, 110 Gymnasium Place, Saskatoom, SK S7N 0W9, Canada","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019868633","display_name":"Youlian Pan","orcid":"https://orcid.org/0000-0002-0158-0081"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Youlian Pan","raw_affiliation_strings":["Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada"],"affiliations":[{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I4210159778"]},{"raw_affiliation_string":"Institute for Information Technology of the National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada","institution_ids":["https://openalex.org/I197604219"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066354389"],"corresponding_institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210159778"],"apc_list":null,"apc_paid":null,"fwci":0.8267,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.79223976,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.780040979385376},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.7702611684799194},{"id":"https://openalex.org/keywords/systemic-acquired-resistance","display_name":"Systemic acquired resistance","score":0.7459589838981628},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.7001665830612183},{"id":"https://openalex.org/keywords/salicylic-acid","display_name":"Salicylic acid","score":0.5656352043151855},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5417848229408264},{"id":"https://openalex.org/keywords/npr1","display_name":"NPR1","score":0.52999347448349},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5032200217247009},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49901890754699707},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4901662766933441},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4820328950881958},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11070403456687927}],"concepts":[{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.780040979385376},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.7702611684799194},{"id":"https://openalex.org/C93058950","wikidata":"https://www.wikidata.org/wiki/Q3655787","display_name":"Systemic acquired resistance","level":5,"score":0.7459589838981628},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.7001665830612183},{"id":"https://openalex.org/C2778221352","wikidata":"https://www.wikidata.org/wiki/Q193572","display_name":"Salicylic acid","level":2,"score":0.5656352043151855},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5417848229408264},{"id":"https://openalex.org/C8741621","wikidata":"https://www.wikidata.org/wiki/Q18030203","display_name":"NPR1","level":4,"score":0.52999347448349},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5032200217247009},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49901890754699707},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4901662766933441},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4820328950881958},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11070403456687927},{"id":"https://openalex.org/C2778198053","wikidata":"https://www.wikidata.org/wiki/Q181754","display_name":"Heart failure","level":2,"score":0.0},{"id":"https://openalex.org/C2775915353","wikidata":"https://www.wikidata.org/wiki/Q1571529","display_name":"Natriuretic peptide","level":3,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/cibcb.2010.5510589","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2010.5510589","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology","raw_type":"proceedings-article"},{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:15261149","is_oa":true,"landing_page_url":"https://nrc-publications.canada.ca/eng/view/object/?id=0a781464-afcc-445b-8641-add274937326","pdf_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=0a781464-afcc-445b-8641-add274937326","source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.232.4999","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.232.4999","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:15261149","is_oa":true,"landing_page_url":"https://nrc-publications.canada.ca/eng/view/object/?id=0a781464-afcc-445b-8641-add274937326","pdf_url":"https://nrc-publications.canada.ca/eng/view/accepted/?id=0a781464-afcc-445b-8641-add274937326","source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1980130378.pdf","grobid_xml":"https://content.openalex.org/works/W1980130378.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W283494844","https://openalex.org/W1522477135","https://openalex.org/W1553696291","https://openalex.org/W1974340769","https://openalex.org/W1975748737","https://openalex.org/W1993734701","https://openalex.org/W2006446257","https://openalex.org/W2007471837","https://openalex.org/W2021521164","https://openalex.org/W2023183725","https://openalex.org/W2026238074","https://openalex.org/W2054342860","https://openalex.org/W2071097210","https://openalex.org/W2071504725","https://openalex.org/W2082232137","https://openalex.org/W2084067481","https://openalex.org/W2091723965","https://openalex.org/W2092806862","https://openalex.org/W2096028681","https://openalex.org/W2103794175","https://openalex.org/W2109535147","https://openalex.org/W2115771825","https://openalex.org/W2125208521","https://openalex.org/W2138073318","https://openalex.org/W2139170657","https://openalex.org/W2149912063","https://openalex.org/W2156841851","https://openalex.org/W2160533336","https://openalex.org/W2162515800","https://openalex.org/W2166559705","https://openalex.org/W2170217346","https://openalex.org/W2548209566","https://openalex.org/W4205372329","https://openalex.org/W6633402183","https://openalex.org/W6729373800","https://openalex.org/W7073599328"],"related_works":["https://openalex.org/W2928144632","https://openalex.org/W1990004024","https://openalex.org/W2031236247","https://openalex.org/W2021521164","https://openalex.org/W2066864035","https://openalex.org/W1594012662","https://openalex.org/W2156176205","https://openalex.org/W2061954020","https://openalex.org/W2106134872","https://openalex.org/W2921402411"],"abstract_inverted_index":{"We":[0,54,121],"studied":[1],"defense":[2,64],"mechanism":[3],"of":[4,24,31,59,70,92,111,125,141],"the":[5,25,32,56,71,84,87,108,112,126,142],"Arabidopsis":[6,119],"thaliana":[7],"subjected":[8],"to":[9,97,130],"Salicylic":[10],"Acid":[11],"(SA)":[12],"treatment":[13],"for":[14],"0,":[15],"1,":[16],"and":[17,48,89,144],"8":[18],"hours":[19],"using":[20],"a":[21,68,104],"broader":[22],"application":[23],"frequent":[26],"itemset":[27],"approach.":[28],"Four":[29],"genotypes":[30],"plant":[33],"were":[34],"used":[35],"in":[36,118,134,148],"this":[37,149],"study,":[38],"Columbia":[39],"wild":[40],"type,":[41],"mutant":[42,45,50],"npr1-3,":[43],"double":[44],"tga1":[46],"tga4":[47],"triple":[49],"tga2":[51],"tga5":[52],"tga6.":[53],"defined":[55],"major":[57],"patterns":[58],"transcription":[60,113],"regulation":[61],"governing":[62],"pathogen":[63],"mechanism,":[65],"thereby":[66],"creating":[67],"model":[69,82],"Systemic":[72],"Acquired":[73],"Resistance":[74],"(SAR)":[75],"at":[76],"three":[77],"time":[78],"points.":[79],"The":[80,100],"temporal":[81,109],"describes":[83],"relationships":[85],"among":[86],"regulators":[88],"defines":[90],"groups":[91],"genes":[93,127],"that":[94,123,128],"are":[95,133],"subject":[96],"similar":[98],"regulation.":[99],"results":[101],"obtained":[102],"offered":[103],"first":[105],"glimpse":[106],"into":[107],"pattern":[110],"regulatory":[114],"network":[115],"during":[116],"SAR":[117],"thaliana.":[120],"found":[122],"most":[124],"responded":[129],"SA":[131],"challenge":[132],"fact":[135],"dependent":[136],"on":[137],"one":[138],"or":[139],"more":[140],"NPR1":[143],"TGA":[145],"factors":[146],"tested":[147],"study.":[150]},"counts_by_year":[],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
