{"id":"https://openalex.org/W2136987287","doi":"https://doi.org/10.1109/cibcb.2007.4221244","title":"Multi-Criterion Phylogenetic Inference using Evolutionary Algorithms","display_name":"Multi-Criterion Phylogenetic Inference using Evolutionary Algorithms","publication_year":2007,"publication_date":"2007-04-01","ids":{"openalex":"https://openalex.org/W2136987287","doi":"https://doi.org/10.1109/cibcb.2007.4221244","mag":"2136987287"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2007.4221244","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2007.4221244","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109036348","display_name":"Waldo Cancino","orcid":null},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"W. Cancino","raw_affiliation_strings":["Institute of Mathematics and Computer Science, University of Sao Paulo, Sao Paulo, Brazil","Inst. of Math. & Comput. Sci., Sao Paulo Univ., Sao Carlos"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Sao Paulo, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Inst. of Math. & Comput. Sci., Sao Paulo Univ., Sao Carlos","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084551356","display_name":"Alexandre C. B. Delbem","orcid":"https://orcid.org/0000-0003-1810-1742"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A.C.B. Delbem","raw_affiliation_strings":["Institute of Mathematics and Computer Science, University of Sao Paulo, Sao Paulo, Brazil","Inst. of Math. & Comput. Sci., Sao Paulo Univ., Sao Carlos"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Sao Paulo, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Inst. of Math. & Comput. Sci., Sao Paulo Univ., Sao Carlos","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5109036348"],"corresponding_institution_ids":["https://openalex.org/I17974374"],"apc_list":null,"apc_paid":null,"fwci":0.5236,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.65656758,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"33","issue":null,"first_page":"351","last_page":"358"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9588000178337097,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8192248344421387},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.6697260737419128},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6156288981437683},{"id":"https://openalex.org/keywords/maximum-parsimony","display_name":"Maximum parsimony","score":0.5816500782966614},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.5762765407562256},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5505328178405762},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5201630592346191},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5035902857780457},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4822295606136322},{"id":"https://openalex.org/keywords/multi-objective-optimization","display_name":"Multi-objective optimization","score":0.4738883376121521},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4471556842327118},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43346500396728516},{"id":"https://openalex.org/keywords/computational-phylogenetics","display_name":"Computational phylogenetics","score":0.4196358919143677},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.37208956480026245},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.32235223054885864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3033747375011444},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18602532148361206},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1664508581161499}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8192248344421387},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.6697260737419128},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6156288981437683},{"id":"https://openalex.org/C22799545","wikidata":"https://www.wikidata.org/wiki/Q1805805","display_name":"Maximum parsimony","level":5,"score":0.5816500782966614},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.5762765407562256},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5505328178405762},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5201630592346191},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5035902857780457},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4822295606136322},{"id":"https://openalex.org/C68781425","wikidata":"https://www.wikidata.org/wiki/Q2052203","display_name":"Multi-objective optimization","level":2,"score":0.4738883376121521},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4471556842327118},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43346500396728516},{"id":"https://openalex.org/C41168302","wikidata":"https://www.wikidata.org/wiki/Q3772859","display_name":"Computational phylogenetics","level":5,"score":0.4196358919143677},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.37208956480026245},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.32235223054885864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3033747375011444},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18602532148361206},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1664508581161499},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2007.4221244","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2007.4221244","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W791550880","https://openalex.org/W1519277610","https://openalex.org/W1546639740","https://openalex.org/W1555986815","https://openalex.org/W1595498733","https://openalex.org/W1639032689","https://openalex.org/W1844951369","https://openalex.org/W1867732144","https://openalex.org/W1970424517","https://openalex.org/W1983002447","https://openalex.org/W1990263013","https://openalex.org/W1990284472","https://openalex.org/W1996835973","https://openalex.org/W2009596137","https://openalex.org/W2027440639","https://openalex.org/W2030517987","https://openalex.org/W2030966943","https://openalex.org/W2048132103","https://openalex.org/W2068225247","https://openalex.org/W2070919193","https://openalex.org/W2091378286","https://openalex.org/W2095145214","https://openalex.org/W2097706568","https://openalex.org/W2102424972","https://openalex.org/W2103546861","https://openalex.org/W2106990934","https://openalex.org/W2107594154","https://openalex.org/W2112956791","https://openalex.org/W2113926965","https://openalex.org/W2119632499","https://openalex.org/W2126105956","https://openalex.org/W2146344742","https://openalex.org/W2148530335","https://openalex.org/W2156166254","https://openalex.org/W2163892779","https://openalex.org/W2164277750","https://openalex.org/W2166016615","https://openalex.org/W2167159964","https://openalex.org/W2246270786","https://openalex.org/W2323517320","https://openalex.org/W2913920108","https://openalex.org/W3023540311","https://openalex.org/W4205208900","https://openalex.org/W4233359534","https://openalex.org/W4233815609","https://openalex.org/W4246001213","https://openalex.org/W4247016878","https://openalex.org/W4248560264","https://openalex.org/W4254275792","https://openalex.org/W4254717640","https://openalex.org/W4293052628","https://openalex.org/W6638771720","https://openalex.org/W6674647444","https://openalex.org/W6676143243","https://openalex.org/W6684485959"],"related_works":["https://openalex.org/W2252576209","https://openalex.org/W4389053046","https://openalex.org/W2791652447","https://openalex.org/W2120975787","https://openalex.org/W2963820820","https://openalex.org/W4300265711","https://openalex.org/W2520823390","https://openalex.org/W4238482389","https://openalex.org/W1993276924","https://openalex.org/W2153928190"],"abstract_inverted_index":{"Various":[0],"phylogenetic":[1,39,145],"reconstruction":[2],"methods":[3],"have":[4],"been":[5],"proposed":[6,114],"in":[7],"order":[8],"to":[9,36,46,76],"determine":[10],"the":[11,34,37,113,124],"most":[12],"accurate":[13],"tree":[14],"that":[15,130],"represents":[16],"evolutionary":[17,83],"relationships":[18],"among":[19],"species.":[20],"Each":[21],"method":[22],"defines":[23],"a":[24,58,68,81,117,121,131],"criterion":[25,32,149],"for":[26],"evaluation":[27],"of":[28,70,107,133],"possible":[29],"solutions.":[30],"This":[31],"leads":[33],"search":[35],"best":[38],"tree.":[40],"However,":[41],"different":[42],"criteria":[43,125],"may":[44],"lead":[45],"distinct":[47],"phylogenies,":[48],"which":[49,87],"often":[50],"conflict":[51],"with":[52],"each":[53,111],"other.":[54],"In":[55,97],"this":[56],"context,":[57],"multi-objective":[59,82],"approach":[60],"can":[61],"be":[62],"useful":[63],"since":[64],"it":[65],"could":[66],"produce":[67],"set":[69],"optimal":[71],"trees":[72],"(Pareto":[73],"front)":[74],"according":[75],"multiple":[77],"criteria.":[78,96],"We":[79],"propose":[80],"algorithm,":[84],"called":[85],"Phylo-MOEA,":[86],"is":[88],"focused":[89],"on":[90],"maximum":[91,94],"parsimony":[92],"and":[93],"likelihood":[95],"experiments,":[98],"several":[99],"PhyloMOEA":[100,136],"trials":[101],"were":[102],"performed":[103],"using":[104,147],"four":[105],"datasets":[106],"nucleotide":[108],"sequences.":[109],"For":[110],"dataset,":[112],"algorithm":[115],"found":[116,143],"Pareto":[118],"front":[119],"representing":[120],"trade-off":[122],"between":[123],"used.":[126],"Moreover,":[127],"SH-test":[128],"showed":[129],"number":[132],"solutions":[134,142],"from":[135],"are":[137],"not":[138],"significantly":[139],"worse":[140],"than":[141],"by":[144],"programs":[146],"one":[148]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}