{"id":"https://openalex.org/W3083765355","doi":"https://doi.org/10.1109/cec48606.2020.9185808","title":"High-Performance Virus Detection System by using Deep Learning","display_name":"High-Performance Virus Detection System by using Deep Learning","publication_year":2020,"publication_date":"2020-07-01","ids":{"openalex":"https://openalex.org/W3083765355","doi":"https://doi.org/10.1109/cec48606.2020.9185808","mag":"3083765355"},"language":"en","primary_location":{"id":"doi:10.1109/cec48606.2020.9185808","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec48606.2020.9185808","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE Congress on Evolutionary Computation (CEC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087111281","display_name":"Ying-Feng Hsu","orcid":"https://orcid.org/0000-0002-5335-4510"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ying-Feng Hsu","raw_affiliation_strings":["Cybermedia Center, Osaka University, Osaka, Japan"],"affiliations":[{"raw_affiliation_string":"Cybermedia Center, Osaka University, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087373672","display_name":"Makiko Ito","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Makiko Ito","raw_affiliation_strings":["Fujitsu Laboratories Ltd., Kanagawa, Japan"],"affiliations":[{"raw_affiliation_string":"Fujitsu Laboratories Ltd., Kanagawa, Japan","institution_ids":["https://openalex.org/I2252096349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021357262","display_name":"Takumi Maruyama","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takumi Maruyama","raw_affiliation_strings":["Fujitsu Limited, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Fujitsu Limited, Tokyo, Japan","institution_ids":["https://openalex.org/I2252096349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102259232","display_name":"Morito Matsuoka","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Morito Matsuoka","raw_affiliation_strings":["Cybermedia Center, Osaka University, Osaka, Japan"],"affiliations":[{"raw_affiliation_string":"Cybermedia Center, Osaka University, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064861217","display_name":"Nicolas Jung","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Nicolas Jung","raw_affiliation_strings":["Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan"],"affiliations":[{"raw_affiliation_string":"Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051979269","display_name":"Yuki Matsumoto","orcid":"https://orcid.org/0000-0002-9143-3498"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuki Matsumoto","raw_affiliation_strings":["Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan"],"affiliations":[{"raw_affiliation_string":"Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001656277","display_name":"Daisuke Motooka","orcid":"https://orcid.org/0000-0002-4616-9608"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daisuke Motooka","raw_affiliation_strings":["Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan"],"affiliations":[{"raw_affiliation_string":"Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035478723","display_name":"Shota Nakamura","orcid":"https://orcid.org/0000-0003-2058-5942"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shota Nakamura","raw_affiliation_strings":["Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan"],"affiliations":[{"raw_affiliation_string":"Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5087111281"],"corresponding_institution_ids":["https://openalex.org/I98285908"],"apc_list":null,"apc_paid":null,"fwci":0.1657,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.49888852,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7877625226974487},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7736548781394958},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6957603096961975},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6262668371200562},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.5856457948684692},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5850067138671875},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5752690434455872},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4837679862976074},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4241969883441925},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.4200447201728821},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.413875937461853},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.33192670345306396},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10598540306091309},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.09594616293907166}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7877625226974487},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7736548781394958},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6957603096961975},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6262668371200562},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.5856457948684692},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5850067138671875},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5752690434455872},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4837679862976074},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4241969883441925},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.4200447201728821},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.413875937461853},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.33192670345306396},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10598540306091309},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.09594616293907166},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec48606.2020.9185808","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec48606.2020.9185808","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE Congress on Evolutionary Computation (CEC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"},{"score":0.41999998688697815,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W180409659","https://openalex.org/W2012010763","https://openalex.org/W2016755151","https://openalex.org/W2055043387","https://openalex.org/W2068448872","https://openalex.org/W2124985265","https://openalex.org/W2134065368","https://openalex.org/W2141476155","https://openalex.org/W2343416635","https://openalex.org/W2507089332","https://openalex.org/W2808191239","https://openalex.org/W4251097584","https://openalex.org/W6607371189","https://openalex.org/W6724959778"],"related_works":["https://openalex.org/W3036436206","https://openalex.org/W4389452281","https://openalex.org/W4238948313","https://openalex.org/W3000916974","https://openalex.org/W3183189600","https://openalex.org/W3134948850","https://openalex.org/W4394325869","https://openalex.org/W3043668926","https://openalex.org/W3111832393","https://openalex.org/W2826508195"],"abstract_inverted_index":{"Metagenomic":[0],"shotgun":[1],"sequencing":[2,24,31,127,151],"enables":[3,181],"us":[4],"to":[5,59,88,98,153,156,164,206,232],"explore":[6],"diverse":[7],"DNA":[8,126],"sequences":[9],"from":[10,106,129],"viruses,":[11],"bacteria,":[12],"and":[13,70,76,120,133,147,170,188,201,211],"eukaryotic":[14],"microbes":[15],"in":[16,66],"complex":[17],"samples.":[18],"As":[19],"the":[20,67,118,123,138,149,158,167,175,209,223,233],"continuous":[21],"advancement":[22],"of":[23,30,84,125,140,160,177,199,214],"technology":[25],"generates":[26],"a":[27,39,238],"massive":[28],"amount":[29],"data,":[32],"its":[33],"overall":[34],"computational":[35,212],"complexity":[36],"has":[37],"become":[38],"major":[40,113],"challenge":[41],"for":[42,78,122,184],"traditional":[43],"database":[44],"sequence":[45,141],"comparison":[46],"methods.":[47],"Studies":[48],"have":[49,55,71],"shown":[50],"that":[51,180,222,240],"deep":[52,91],"learningoriented":[53],"methods":[54],"been":[56],"widely":[57],"adopted":[58],"solve":[60],"many":[61],"classification":[62,128,145,168],"problems,":[63],"including":[64],"those":[65],"bioinformatics":[68],"field,":[69],"demonstrated":[72],"this":[73,85],"method's":[74],"accuracy":[75,146,169,210,231],"efficiency":[77,213],"analyzing":[79],"large-scale":[80],"datasets.":[81],"The":[82],"aim":[83],"study":[86,110],"attempts":[87],"investigate":[89],"how":[90],"learning":[92],"(LSTM":[93],"model)":[94],"can":[95],"be":[96],"used":[97],"learn":[99],"sequential":[100],"genome":[101],"patterns":[102],"through":[103,192],"virus":[104,161],"detection":[105,203,230],"metagenomic":[107],"data.":[108],"This":[109],"provides":[111],"three":[112],"contributions.":[114],"First,":[115],"we":[116,136,173],"provide":[117],"background":[119],"steps":[121],"task":[124],"data":[130,152],"collection,":[131],"preprocessing,":[132],"normalization.":[134],"Second,":[135],"analyze":[137],"effect":[139],"length":[142],"on":[143],"LSTM":[144,225],"split":[148],"raw":[150],"proper":[154],"subsequences":[155,186],"improve":[157],"outcome":[159],"detection.":[162],"Third,":[163],"enhance":[165],"both":[166],"processing":[171],"speed,":[172],"introduce":[174],"concept":[176],"discrimination":[178],"function":[179],"prediction":[182],"results":[183,187],"multiple":[185],"accelerated":[189],"these":[190],"processes":[191],"GPU":[193],"parallel":[194],"computing.":[195],"Two":[196],"case":[197],"studies":[198],"HCV":[200],"influenza":[202],"were":[204],"conducted":[205],"elaborate":[207],"upon":[208],"our":[215],"proposed":[216,224],"approach.":[217],"Our":[218],"test":[219],"result":[220],"showed":[221],"model":[226],"obtained":[227],"similar":[228],"pathogen":[229],"conventional":[234],"BLAST":[235],"method":[236],"with":[237],"speed":[239],"was":[241],"about":[242],"36":[243],"times":[244],"faster.":[245]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}