{"id":"https://openalex.org/W2092962205","doi":"https://doi.org/10.1109/cec.2014.6900628","title":"Evolved neural networks for HIV-1 co-receptor identification","display_name":"Evolved neural networks for HIV-1 co-receptor identification","publication_year":2014,"publication_date":"2014-07-01","ids":{"openalex":"https://openalex.org/W2092962205","doi":"https://doi.org/10.1109/cec.2014.6900628","mag":"2092962205"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2014.6900628","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2014.6900628","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Congress on Evolutionary Computation (CEC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014941588","display_name":"Gary B. Fogel","orcid":"https://orcid.org/0000-0003-2848-3043"},"institutions":[{"id":"https://openalex.org/I4210110140","display_name":"Natural Selection (United States)","ror":"https://ror.org/024es8b17","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary B. Fogel","raw_affiliation_strings":["Natural Selection Inc, San Diego, CA, US","Natural Selection, Inc., San Diego, CA 92121 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Selection Inc, San Diego, CA, US","institution_ids":["https://openalex.org/I4210110140"]},{"raw_affiliation_string":"Natural Selection, Inc., San Diego, CA 92121 USA","institution_ids":["https://openalex.org/I4210110140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021190624","display_name":"Enoch S. Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110140","display_name":"Natural Selection (United States)","ror":"https://ror.org/024es8b17","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Enoch S. Liu","raw_affiliation_strings":["Natural Selection Inc, San Diego, CA, US","Natural Selection, Inc., San Diego, CA 92121 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural Selection Inc, San Diego, CA, US","institution_ids":["https://openalex.org/I4210110140"]},{"raw_affiliation_string":"Natural Selection, Inc., San Diego, CA 92121 USA","institution_ids":["https://openalex.org/I4210110140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030387965","display_name":"Marco Salemi","orcid":"https://orcid.org/0000-0003-0136-2102"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco Salemi","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, University of Florida, Gainesville, FL, USA","University of Florida, Department of Pathology and Laboratory Medicine, Gainesville, FL 32610 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"University of Florida, Department of Pathology and Laboratory Medicine, Gainesville, FL 32610 USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024152947","display_name":"Susanna L. Lamers","orcid":"https://orcid.org/0000-0002-8163-5571"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Susanna L. Lamers","raw_affiliation_strings":["BioInfoExperts, LLC, Thibodaux, LA, USA","BioInfoExperts, LLC, Thibodaux, LA 70302 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioInfoExperts, LLC, Thibodaux, LA, USA","institution_ids":[]},{"raw_affiliation_string":"BioInfoExperts, LLC, Thibodaux, LA 70302 USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077047503","display_name":"Michael S. McGrath","orcid":"https://orcid.org/0000-0002-7232-2602"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael S. McGrath","raw_affiliation_strings":["Department of Laboratory Medicine, University of California at San Francisco, San Francisco, CA, USA","University of California at San Francisco, Department of Laboratory Medicine, Pathology, and Medicine and the AIDS and Cancer Specimen Resource, San Francisco, CA 94143 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, University of California at San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"University of California at San Francisco, Department of Laboratory Medicine, Pathology, and Medicine and the AIDS and Cancer Specimen Resource, San Francisco, CA 94143 USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":5.3571,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.91891892,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"80","issue":null,"first_page":"2778","last_page":"2784"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tropism","display_name":"Tropism","score":0.7207709550857544},{"id":"https://openalex.org/keywords/chemokine-receptor","display_name":"Chemokine receptor","score":0.6927796006202698},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.63577800989151},{"id":"https://openalex.org/keywords/cxcr4","display_name":"CXCR4","score":0.6006807088851929},{"id":"https://openalex.org/keywords/co-receptor","display_name":"Co-receptor","score":0.5879426002502441},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5360835790634155},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5155212879180908},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5130204558372498},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4643773138523102},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.4398152530193329},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4386492371559143},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4359472393989563},{"id":"https://openalex.org/keywords/viral-entry","display_name":"Viral entry","score":0.41407281160354614},{"id":"https://openalex.org/keywords/chemokine","display_name":"Chemokine","score":0.3984905779361725},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38224369287490845},{"id":"https://openalex.org/keywords/viral-replication","display_name":"Viral replication","score":0.25973138213157654},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18073460459709167},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12841761112213135}],"concepts":[{"id":"https://openalex.org/C35693153","wikidata":"https://www.wikidata.org/wiki/Q239762","display_name":"Tropism","level":3,"score":0.7207709550857544},{"id":"https://openalex.org/C12823836","wikidata":"https://www.wikidata.org/wiki/Q24720618","display_name":"Chemokine receptor","level":4,"score":0.6927796006202698},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.63577800989151},{"id":"https://openalex.org/C129470790","wikidata":"https://www.wikidata.org/wiki/Q415718","display_name":"CXCR4","level":4,"score":0.6006807088851929},{"id":"https://openalex.org/C125590012","wikidata":"https://www.wikidata.org/wiki/Q2086231","display_name":"Co-receptor","level":3,"score":0.5879426002502441},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5360835790634155},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5155212879180908},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5130204558372498},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4643773138523102},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4398152530193329},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4386492371559143},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4359472393989563},{"id":"https://openalex.org/C58475186","wikidata":"https://www.wikidata.org/wiki/Q4118894","display_name":"Viral entry","level":4,"score":0.41407281160354614},{"id":"https://openalex.org/C13373296","wikidata":"https://www.wikidata.org/wiki/Q421866","display_name":"Chemokine","level":3,"score":0.3984905779361725},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38224369287490845},{"id":"https://openalex.org/C140704245","wikidata":"https://www.wikidata.org/wiki/Q3933202","display_name":"Viral replication","level":3,"score":0.25973138213157654},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18073460459709167},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12841761112213135},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2014.6900628","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2014.6900628","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Congress on Evolutionary Computation (CEC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8100000023841858,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W375268595","https://openalex.org/W1519800441","https://openalex.org/W1571153387","https://openalex.org/W1966261980","https://openalex.org/W1968494119","https://openalex.org/W1984547849","https://openalex.org/W1987860220","https://openalex.org/W1988215875","https://openalex.org/W1989321299","https://openalex.org/W1989608979","https://openalex.org/W2001887813","https://openalex.org/W2006771360","https://openalex.org/W2009950794","https://openalex.org/W2012356776","https://openalex.org/W2017592356","https://openalex.org/W2021733025","https://openalex.org/W2030758829","https://openalex.org/W2048837095","https://openalex.org/W2052627427","https://openalex.org/W2053088580","https://openalex.org/W2054331494","https://openalex.org/W2092841704","https://openalex.org/W2100647507","https://openalex.org/W2101247921","https://openalex.org/W2103575890","https://openalex.org/W2104317084","https://openalex.org/W2104318155","https://openalex.org/W2114394687","https://openalex.org/W2119019497","https://openalex.org/W2122224981","https://openalex.org/W2124290836","https://openalex.org/W2124457330","https://openalex.org/W2125633498","https://openalex.org/W2128962829","https://openalex.org/W2136859791","https://openalex.org/W2137493643","https://openalex.org/W2147169218","https://openalex.org/W2148314976","https://openalex.org/W2149606648","https://openalex.org/W2152207030","https://openalex.org/W2157236175","https://openalex.org/W2162889372","https://openalex.org/W2165712302","https://openalex.org/W2171273743","https://openalex.org/W2275351935","https://openalex.org/W2292638872","https://openalex.org/W2314111724","https://openalex.org/W2402597187","https://openalex.org/W2408836370","https://openalex.org/W2419179490","https://openalex.org/W4244736178","https://openalex.org/W6682244478","https://openalex.org/W6696940393"],"related_works":["https://openalex.org/W3089978350","https://openalex.org/W2149407932","https://openalex.org/W2136760141","https://openalex.org/W2424165882","https://openalex.org/W2136859791","https://openalex.org/W2170557807","https://openalex.org/W2406387481","https://openalex.org/W1810432959","https://openalex.org/W4252980786","https://openalex.org/W2275351935"],"abstract_inverted_index":{"HIV-1":[0,20,89,100],"infects":[1],"a":[2,96],"variety":[3],"of":[4,40,74,99],"cell":[5],"types":[6],"such":[7],"as":[8],"macrophages,":[9],"T-cells":[10],"and":[11,34,52,95,102],"dendritic":[12],"cells":[13],"by":[14],"expressing":[15],"different":[16],"chemokine":[17],"receptors.":[18],"R5":[19],"viruses":[21,29,54],"use":[22,30,39],"the":[23,31,77],"CCR5":[24],"co-receptor":[25,70],"for":[26],"entry,":[27],"X4":[28,51],"CXCR4":[32],"co-receptor,":[33],"several":[35],"viral":[36,69],"strains":[37],"make":[38],"both":[41],"co-receptors":[42],"(a":[43],"so-called":[44],"\u201cdual":[45],"tropic\u201d":[46],"or":[47],"R5X4":[48,53,78],"virus).":[49],"Both":[50],"are":[55],"associated":[56],"with":[57],"late":[58],"stage":[59],"rapid":[60],"progression":[61],"to":[62,67,87,104],"AIDS.":[63],"It":[64],"remains":[65],"difficult":[66],"identify":[68],"type":[71],"in":[72],"advance":[73],"treatment,":[75],"especially":[76],"variety.":[79],"In":[80],"this":[81],"paper":[82],"we":[83],"extended":[84],"previous":[85],"work":[86],"classify":[88],"tropism":[90],"using":[91],"evolved":[92],"neural":[93],"networks":[94],"larger":[97],"set":[98],"sequences":[101],"features":[103],"improve":[105],"overall":[106],"classification":[107],"accuracy.":[108]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
