{"id":"https://openalex.org/W2077753211","doi":"https://doi.org/10.1109/cec.2013.6557899","title":"Handling constraints in the HP model for protein structure prediction by multiobjective optimization","display_name":"Handling constraints in the HP model for protein structure prediction by multiobjective optimization","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W2077753211","doi":"https://doi.org/10.1109/cec.2013.6557899","mag":"2077753211"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2013.6557899","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2013.6557899","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066395629","display_name":"Mario Garza-Fabre","orcid":"https://orcid.org/0000-0002-7737-3011"},"institutions":[{"id":"https://openalex.org/I68368234","display_name":"Centro de Investigaci\u00f3n y de Estudios Avanzados del Instituto Polit\u00e9cnico Nacional","ror":"https://ror.org/009eqmr18","country_code":"MX","type":"facility","lineage":["https://openalex.org/I59361560","https://openalex.org/I68368234"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Mario Garza-Fabre","raw_affiliation_strings":["Information Technology Laboratory, CINVESTAV Tamaulipas, Ciudad Victoria, Tamaulipas, Mexico","Inf. Technol. Lab., Cinvestav Tamaulipas, Ciudad Victoria, Mexico"],"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, CINVESTAV Tamaulipas, Ciudad Victoria, Tamaulipas, Mexico","institution_ids":[]},{"raw_affiliation_string":"Inf. Technol. Lab., Cinvestav Tamaulipas, Ciudad Victoria, Mexico","institution_ids":["https://openalex.org/I68368234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046224413","display_name":"Gregorio Toscano\u2010Pulido","orcid":"https://orcid.org/0000-0001-5311-8027"},"institutions":[{"id":"https://openalex.org/I68368234","display_name":"Centro de Investigaci\u00f3n y de Estudios Avanzados del Instituto Polit\u00e9cnico Nacional","ror":"https://ror.org/009eqmr18","country_code":"MX","type":"facility","lineage":["https://openalex.org/I59361560","https://openalex.org/I68368234"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Gregorio Toscano-Pulido","raw_affiliation_strings":["Information Technology Laboratory, CINVESTAV Tamaulipas, Ciudad Victoria, Tamaulipas, Mexico","Inf. Technol. Lab., Cinvestav Tamaulipas, Ciudad Victoria, Mexico"],"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, CINVESTAV Tamaulipas, Ciudad Victoria, Tamaulipas, Mexico","institution_ids":[]},{"raw_affiliation_string":"Inf. Technol. Lab., Cinvestav Tamaulipas, Ciudad Victoria, Mexico","institution_ids":["https://openalex.org/I68368234"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5104438053","display_name":"Eduardo Rodr\u00edguez-Tello","orcid":"https://orcid.org/0000-0002-0333-0633"},"institutions":[{"id":"https://openalex.org/I68368234","display_name":"Centro de Investigaci\u00f3n y de Estudios Avanzados del Instituto Polit\u00e9cnico Nacional","ror":"https://ror.org/009eqmr18","country_code":"MX","type":"facility","lineage":["https://openalex.org/I59361560","https://openalex.org/I68368234"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Eduardo Rodriguez-Tello","raw_affiliation_strings":["Information Technology Laboratory, CINVESTAV Tamaulipas, Ciudad Victoria, Tamaulipas, Mexico","Inf. Technol. Lab., Cinvestav Tamaulipas, Ciudad Victoria, Mexico"],"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, CINVESTAV Tamaulipas, Ciudad Victoria, Tamaulipas, Mexico","institution_ids":[]},{"raw_affiliation_string":"Inf. Technol. Lab., Cinvestav Tamaulipas, Ciudad Victoria, Mexico","institution_ids":["https://openalex.org/I68368234"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066395629"],"corresponding_institution_ids":["https://openalex.org/I68368234"],"apc_list":null,"apc_paid":null,"fwci":0.7475,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.71871705,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"2728","last_page":"2735"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11844","display_name":"Lipid metabolism and biosynthesis","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1303","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.7149978280067444},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6406397819519043},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.6327738165855408},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.6119208931922913},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5664010643959045},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.5141523480415344},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4823321998119354},{"id":"https://openalex.org/keywords/multi-objective-optimization","display_name":"Multi-objective optimization","score":0.468955934047699},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45532137155532837},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4326328635215759},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28767305612564087},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22099748253822327},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.20675623416900635},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.06878465414047241}],"concepts":[{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.7149978280067444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6406397819519043},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.6327738165855408},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.6119208931922913},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5664010643959045},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.5141523480415344},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4823321998119354},{"id":"https://openalex.org/C68781425","wikidata":"https://www.wikidata.org/wiki/Q2052203","display_name":"Multi-objective optimization","level":2,"score":0.468955934047699},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45532137155532837},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4326328635215759},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28767305612564087},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22099748253822327},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.20675623416900635},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.06878465414047241},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2013.6557899","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2013.6557899","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"},{"id":"https://openalex.org/F4320337573","display_name":"Information Technology Laboratory","ror":"https://ror.org/0440c3437"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W123766325","https://openalex.org/W146052091","https://openalex.org/W200248288","https://openalex.org/W1483822498","https://openalex.org/W1489848052","https://openalex.org/W1537599249","https://openalex.org/W1544672259","https://openalex.org/W1551893277","https://openalex.org/W1613273921","https://openalex.org/W1832370490","https://openalex.org/W1971453213","https://openalex.org/W1976869909","https://openalex.org/W1984527736","https://openalex.org/W2013842855","https://openalex.org/W2026980998","https://openalex.org/W2045777307","https://openalex.org/W2075085376","https://openalex.org/W2080382112","https://openalex.org/W2089028463","https://openalex.org/W2094423387","https://openalex.org/W2100356383","https://openalex.org/W2101206889","https://openalex.org/W2110368321","https://openalex.org/W2123532080","https://openalex.org/W2126105956","https://openalex.org/W2151339633","https://openalex.org/W2154811699","https://openalex.org/W2168843981","https://openalex.org/W2171283513","https://openalex.org/W2176003014","https://openalex.org/W2348980703","https://openalex.org/W2611927968","https://openalex.org/W4246565613","https://openalex.org/W4285719527","https://openalex.org/W6604932053","https://openalex.org/W6629133029","https://openalex.org/W6653549556","https://openalex.org/W6682881620"],"related_works":["https://openalex.org/W2789681586","https://openalex.org/W2794361564","https://openalex.org/W4243392960","https://openalex.org/W3156820950","https://openalex.org/W4232791346","https://openalex.org/W2971069100","https://openalex.org/W2504553392","https://openalex.org/W2331509522","https://openalex.org/W2937748796","https://openalex.org/W2135210976"],"abstract_inverted_index":{"The":[0,71],"hydrophobic-polar":[1],"(TIP)":[2],"model":[3,110],"is":[4,41,68,81],"an":[5],"abstract":[6],"representation":[7],"of":[8,24,28,38,103,149,160,186],"the":[9,21,25,34,60,84,91,107,113,116,131,134,147,150,155,158,177,189],"protein":[10,169],"structure":[11],"prediction":[12],"problem,":[13],"where":[14],"hydrophobic":[15],"interactions":[16],"are":[17],"assumed":[18],"to":[19,90,126,145],"be":[20,172],"major":[22],"determinant":[23],"folded":[26],"state":[27],"proteins.":[29],"This":[30],"paper":[31],"inquires":[32],"into":[33,166],"constraint-handling":[35,57],"design":[36],"issue":[37],"metaheuristics,":[39],"which":[40,181],"crucial":[42],"when":[43],"dealing":[44],"with":[45,124],"such":[46,138],"a":[47,95,100,139,184],"challenging":[48],"and":[49,99,122],"highly":[50],"constrained":[51],"combinatorial":[52],"optimization":[53,66],"problem.":[54],"A":[55],"new":[56],"strategy":[58,119],"for":[59,74,83,106],"TIP":[61,109],"model,":[62],"based":[63],"on":[64,112],"multiobjective":[65,72,118,152],"concepts,":[67],"here":[69],"proposed.":[70],"approach":[73],"handling":[75],"constraints":[76],"in":[77,87,188],"this":[78,88,161],"particular":[79],"problem":[80],"explored":[82],"first":[85],"time":[86],"study,":[89],"authors'":[92],"knowledge.":[93],"Using":[94],"basic":[96],"genetic":[97],"algorithm":[98],"large":[101],"set":[102],"test":[104],"instances":[105],"two-dimensional":[108],"(based":[111],"square":[114],"lattice),":[115],"proposed":[117,151],"was":[120,143],"evaluated":[121],"compared":[123],"respect":[125],"commonly":[127],"adopted":[128],"techniques":[129],"from":[130],"literature.":[132,191],"On":[133,154],"one":[135],"hand,":[136,157],"through":[137],"comparative":[140],"analysis":[141],"it":[142],"possible":[144],"demonstrate":[146],"suitability":[148],"strategy.":[153],"other":[156],"results":[159],"study":[162],"provide":[163],"further":[164],"insight":[165],"whether":[167],"infeasible":[168],"conformations":[170],"should":[171],"allowed":[173],"or":[174],"prevented":[175],"during":[176],"metaheuristic":[178],"search":[179],"process,":[180],"has":[182],"been":[183],"subject":[185],"concern":[187],"specialized":[190]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3}],"updated_date":"2026-03-25T13:04:00.132906","created_date":"2025-10-10T00:00:00"}
