{"id":"https://openalex.org/W2077549107","doi":"https://doi.org/10.1109/cec.2013.6557688","title":"A local search embedded genetic algorithm for simplified protein structure prediction","display_name":"A local search embedded genetic algorithm for simplified protein structure prediction","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W2077549107","doi":"https://doi.org/10.1109/cec.2013.6557688","mag":"2077549107"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2013.6557688","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2013.6557688","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086125031","display_name":"Mahmood A. Rashid","orcid":"https://orcid.org/0000-0003-3347-2381"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mahmood A Rashid","raw_affiliation_strings":["Institute for Integrated and Intelligent Systems (IIIS), Griffith University, Australia","Queensland Research Laboratory, National ICT Australia Limited, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated and Intelligent Systems (IIIS), Griffith University, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Queensland Research Laboratory, National ICT Australia Limited, Australia","institution_ids":["https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086354302","display_name":"M. A. Hakim Newton","orcid":"https://orcid.org/0000-0001-5655-0683"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"M.A.Hakim Newton","raw_affiliation_strings":["Institute for Integrated and Intelligent Systems (IIIS), Griffith University, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated and Intelligent Systems (IIIS), Griffith University, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055092646","display_name":"Md Tamjidul Hoque","orcid":"https://orcid.org/0000-0002-0110-2194"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Md Tamjidul Hoque","raw_affiliation_strings":["Computer Science, University of New Orleans, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, University of New Orleans, USA","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038675407","display_name":"Abdul Sattar","orcid":"https://orcid.org/0000-0002-2567-2052"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Abdul Sattar","raw_affiliation_strings":["Institute for Integrated and Intelligent Systems (IIIS), Griffith University, Australia","Queensland Research Laboratory, National ICT Australia Limited, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated and Intelligent Systems (IIIS), Griffith University, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Queensland Research Laboratory, National ICT Australia Limited, Australia","institution_ids":["https://openalex.org/I42894916"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1091","last_page":"1098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10100","display_name":"Metaheuristic Optimization Algorithms Research","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tabu-search","display_name":"Tabu search","score":0.8600900173187256},{"id":"https://openalex.org/keywords/local-search","display_name":"Local search (optimization)","score":0.7148106098175049},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.6063051819801331},{"id":"https://openalex.org/keywords/hill-climbing","display_name":"Hill climbing","score":0.6046027541160583},{"id":"https://openalex.org/keywords/guided-local-search","display_name":"Guided Local Search","score":0.5831112861633301},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.5808055996894836},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5682312250137329},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5412856936454773},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5382646322250366},{"id":"https://openalex.org/keywords/iterated-local-search","display_name":"Iterated local search","score":0.532042384147644},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.45582470297813416},{"id":"https://openalex.org/keywords/best-first-search","display_name":"Best-first search","score":0.4523308575153351},{"id":"https://openalex.org/keywords/population-based-incremental-learning","display_name":"Population-based incremental learning","score":0.43055298924446106},{"id":"https://openalex.org/keywords/beam-search","display_name":"Beam search","score":0.4018358886241913},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2645455002784729},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2483484447002411}],"concepts":[{"id":"https://openalex.org/C123370116","wikidata":"https://www.wikidata.org/wiki/Q1424540","display_name":"Tabu search","level":2,"score":0.8600900173187256},{"id":"https://openalex.org/C135320971","wikidata":"https://www.wikidata.org/wiki/Q1868524","display_name":"Local search (optimization)","level":2,"score":0.7148106098175049},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.6063051819801331},{"id":"https://openalex.org/C135450995","wikidata":"https://www.wikidata.org/wiki/Q820272","display_name":"Hill climbing","level":2,"score":0.6046027541160583},{"id":"https://openalex.org/C90189156","wikidata":"https://www.wikidata.org/wiki/Q5615481","display_name":"Guided Local Search","level":3,"score":0.5831112861633301},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.5808055996894836},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5682312250137329},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5412856936454773},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5382646322250366},{"id":"https://openalex.org/C124145224","wikidata":"https://www.wikidata.org/wiki/Q6094397","display_name":"Iterated local search","level":3,"score":0.532042384147644},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.45582470297813416},{"id":"https://openalex.org/C46011968","wikidata":"https://www.wikidata.org/wiki/Q830527","display_name":"Best-first search","level":4,"score":0.4523308575153351},{"id":"https://openalex.org/C184497298","wikidata":"https://www.wikidata.org/wiki/Q7229773","display_name":"Population-based incremental learning","level":3,"score":0.43055298924446106},{"id":"https://openalex.org/C19889080","wikidata":"https://www.wikidata.org/wiki/Q2835852","display_name":"Beam search","level":3,"score":0.4018358886241913},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2645455002784729},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2483484447002411},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/cec.2013.6557688","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2013.6557688","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.vu.edu.au:38562","is_oa":false,"landing_page_url":"https://vuir.vu.edu.au/38562/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400215","display_name":"Victoria University Research Repository (Victoria University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I41156924","host_organization_name":"Victoria University of Wellington","host_organization_lineage":["https://openalex.org/I41156924"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference or Workshop Item"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/58774","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/58774","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference output"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W113688923","https://openalex.org/W123766325","https://openalex.org/W124155803","https://openalex.org/W1539892855","https://openalex.org/W1548178570","https://openalex.org/W1561877279","https://openalex.org/W1564001275","https://openalex.org/W1648987778","https://openalex.org/W1973897761","https://openalex.org/W1977453933","https://openalex.org/W1984527736","https://openalex.org/W2013205100","https://openalex.org/W2019158263","https://openalex.org/W2030955117","https://openalex.org/W2033475723","https://openalex.org/W2045777307","https://openalex.org/W2063087637","https://openalex.org/W2070292124","https://openalex.org/W2077390161","https://openalex.org/W2088025175","https://openalex.org/W2092292464","https://openalex.org/W2100356383","https://openalex.org/W2104670598","https://openalex.org/W2108446152","https://openalex.org/W2121876872","https://openalex.org/W2124848384","https://openalex.org/W2129469300","https://openalex.org/W2137105118","https://openalex.org/W2144981983","https://openalex.org/W2156381947","https://openalex.org/W2159130720","https://openalex.org/W2162042205","https://openalex.org/W2163333444","https://openalex.org/W2171283513","https://openalex.org/W2574970346","https://openalex.org/W2611927968","https://openalex.org/W4233044915","https://openalex.org/W4237774304","https://openalex.org/W4246598646","https://openalex.org/W6604582531","https://openalex.org/W6604932053","https://openalex.org/W6636752806","https://openalex.org/W6678145743","https://openalex.org/W6683598110"],"related_works":["https://openalex.org/W2204575588","https://openalex.org/W4252703652","https://openalex.org/W2540870307","https://openalex.org/W3180740316","https://openalex.org/W2181466609","https://openalex.org/W2061323558","https://openalex.org/W1492450056","https://openalex.org/W4312928368","https://openalex.org/W2901129955","https://openalex.org/W1533229056"],"abstract_inverted_index":{"No":[0],"single":[1],"algorithm":[2,53,139],"suits":[3],"the":[4,7,20,69,77,92,102,110,122,137,145,153,165],"best":[5],"for":[6,121],"protein":[8,56],"structure":[9,57],"prediction":[10,58],"problem.":[11,59],"Therefore,":[12],"researchers":[13],"have":[14],"tried":[15],"hybrid":[16,34,52,162],"techniques":[17],"to":[18,25,108,151],"mix":[19],"power":[21],"of":[22,147],"different":[23,86],"strategies":[24],"gain":[26],"improvements.":[27],"In":[28,142],"this":[29],"paper,":[30],"we":[31,80,104,126],"present":[32],"a":[33,39,44,62,132],"search":[35,42,66,83,99,107,129,149],"framework":[36],"that":[37,160],"embeds":[38],"tabu-based":[40],"local":[41,82,106,128,148],"within":[43],"population":[45,120],"based":[46],"genetic":[47,78,123,138],"algorithm.":[48,124],"We":[49,60,157],"applied":[50],"our":[51,161],"on":[54],"simplified":[55],"use":[61,115,146],"low-resolution":[63],"ab":[64],"initio":[65],"method":[67],"with":[68],"hydrophobic-polar":[70],"energy":[71],"model":[72],"and":[73,94,114],"face-centred-cubic":[74],"lattice.":[75],"Within":[76],"algorithm,":[79],"apply":[81,105,127],"in":[84],"two":[85],"situations:":[87],"i)":[88],"only":[89],"once":[90],"at":[91,98,134],"beginning":[93],"ii)":[95],"every":[96],"time":[97],"stagnation.":[100],"At":[101],"beginning,":[103],"improve":[109,152],"randomly":[111],"generated":[112],"individuals":[113],"them":[116],"as":[117],"an":[118],"initial":[119],"Later,":[125],"after":[130],"applying":[131],"random-walk":[133],"situations":[135],"where":[136],"gets":[140],"stuck.":[141],"both":[143],"cases,":[144],"is":[150],"randomised":[154],"solutions":[155],"quickly.":[156],"experimentally":[158],"show":[159],"approach":[163],"outperforms":[164],"state-of-the-art":[166],"approaches.":[167]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
