{"id":"https://openalex.org/W2168641620","doi":"https://doi.org/10.1109/cec.2013.6557622","title":"An efficient decision rule-based system for the protein residue-residue contact prediction","display_name":"An efficient decision rule-based system for the protein residue-residue contact prediction","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W2168641620","doi":"https://doi.org/10.1109/cec.2013.6557622","mag":"2168641620"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2013.6557622","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2013.6557622","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://idus.us.es/handle//11441/133479","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055088215","display_name":"Alfonso E. M\u00e1rquez-Chamorro","orcid":"https://orcid.org/0000-0002-8243-0404"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Alfonso E. Marquez-Chamorro","raw_affiliation_strings":["School of Engineering, Pablo de Olavide University, Seville, Spain"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Pablo de Olavide University, Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043334355","display_name":"Federico Divina","orcid":"https://orcid.org/0000-0002-0964-9506"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Federico Divina","raw_affiliation_strings":["School of Engineering, Pablo de Olavide University, Seville, Spain"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Pablo de Olavide University, Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012372361","display_name":"Jaume Bacardit","orcid":"https://orcid.org/0000-0002-2692-7205"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jaume Bacardit","raw_affiliation_strings":["School of Computer Science, University of Nottingham, Nottingham, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Nottingham, Nottingham, UK","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049817649","display_name":"Jes\u00fas S. Aguilar\u2013Ruiz","orcid":"https://orcid.org/0000-0002-2666-293X"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jesus S. Aguilar-Ruiz","raw_affiliation_strings":["School of Engineering, Pablo de Olavide University, Seville, Spain"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Pablo de Olavide University, Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5055088215"],"corresponding_institution_ids":["https://openalex.org/I95013407"],"apc_list":null,"apc_paid":null,"fwci":0.1497,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.58432835,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"592","last_page":"597"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.589868426322937},{"id":"https://openalex.org/keywords/amino-acid-residue","display_name":"Amino acid residue","score":0.5621828436851501},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5375160574913025},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5333775281906128},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.5239096879959106},{"id":"https://openalex.org/keywords/decision-rule","display_name":"Decision rule","score":0.4793618321418762},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44493168592453003},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4446311891078949},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4413386285305023},{"id":"https://openalex.org/keywords/matrix-representation","display_name":"Matrix representation","score":0.42103123664855957},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.39559584856033325},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3789810538291931},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32915395498275757},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21795380115509033},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1688564121723175},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09203580021858215}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.589868426322937},{"id":"https://openalex.org/C2994376932","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Amino acid residue","level":4,"score":0.5621828436851501},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5375160574913025},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5333775281906128},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.5239096879959106},{"id":"https://openalex.org/C84839998","wikidata":"https://www.wikidata.org/wiki/Q5249245","display_name":"Decision rule","level":2,"score":0.4793618321418762},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44493168592453003},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4446311891078949},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4413386285305023},{"id":"https://openalex.org/C103275481","wikidata":"https://www.wikidata.org/wiki/Q6787889","display_name":"Matrix representation","level":3,"score":0.42103123664855957},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39559584856033325},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3789810538291931},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32915395498275757},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21795380115509033},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1688564121723175},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09203580021858215},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2781311116","wikidata":"https://www.wikidata.org/wiki/Q83306","display_name":"Group (periodic table)","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cec.2013.6557622","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2013.6557622","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},{"id":"pmh:oai:idus.us.es:11441/133479","is_oa":true,"landing_page_url":"https://idus.us.es/handle//11441/133479","pdf_url":null,"source":{"id":"https://openalex.org/S4306400333","display_name":"idUS (Universidad de Sevilla)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:idus.us.es:11441/133479","is_oa":true,"landing_page_url":"https://idus.us.es/handle//11441/133479","pdf_url":null,"source":{"id":"https://openalex.org/S4306400333","display_name":"idUS (Universidad de Sevilla)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.7599999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W172574161","https://openalex.org/W1531358660","https://openalex.org/W1975304761","https://openalex.org/W2008708467","https://openalex.org/W2033354942","https://openalex.org/W2044573154","https://openalex.org/W2060107523","https://openalex.org/W2101206889","https://openalex.org/W2109197549","https://openalex.org/W2110779321","https://openalex.org/W2113178668","https://openalex.org/W2122414179","https://openalex.org/W2127142405","https://openalex.org/W2129448010","https://openalex.org/W2133990480","https://openalex.org/W2134795315","https://openalex.org/W2143035592","https://openalex.org/W2144152753","https://openalex.org/W2153187042","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W2043066834","https://openalex.org/W1564749278","https://openalex.org/W2471429531","https://openalex.org/W2130853076"],"abstract_inverted_index":{"Protein":[0],"structure":[1],"prediction":[2,44],"remains":[3],"one":[4],"of":[5,23,48,54,66,81,101],"the":[6,43,55,64,99],"most":[7],"important":[8],"challenges":[9],"in":[10,63],"molecular":[11],"biology.":[12],"Contact":[13],"maps":[14],"have":[15],"been":[16],"extensively":[17],"used":[18],"as":[19,58,60],"a":[20,31,46,79],"simplified":[21],"representation":[22],"protein":[24],"structures.":[25],"In":[26],"this":[27],"work,":[28],"we":[29],"propose":[30],"multi-objective":[32],"evolutionary":[33,61],"approach":[34,94],"for":[35],"contact":[36],"map":[37],"prediction.":[38],"The":[39,75],"proposed":[40,76],"method":[41],"bases":[42],"on":[45],"set":[47,80],"physico-chemical":[49],"properties":[50],"and":[51,97],"structural":[52],"features":[53],"amino":[56,68,88],"acids,":[57],"well":[59],"information":[62],"form":[65],"an":[67],"acid":[69],"position":[70],"specific":[71],"scoring":[72],"matrix":[73],"(PSSM).":[74],"technique":[77],"produces":[78],"decision":[82],"rules":[83],"that":[84],"identify":[85],"contacts":[86],"between":[87],"acids.":[89],"Results":[90],"obtained":[91],"by":[92],"our":[93,102],"are":[95],"presented":[96],"confirm":[98],"validity":[100],"proposal.":[103]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
