{"id":"https://openalex.org/W1991944734","doi":"https://doi.org/10.1109/cec.2012.6256625","title":"A mono-objective evolutionary algorithm for Protein Structure Prediction in structural and energetic contexts","display_name":"A mono-objective evolutionary algorithm for Protein Structure Prediction in structural and energetic contexts","publication_year":2012,"publication_date":"2012-06-01","ids":{"openalex":"https://openalex.org/W1991944734","doi":"https://doi.org/10.1109/cec.2012.6256625","mag":"1991944734"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2012.6256625","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2012.6256625","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111462290","display_name":"Rodrigo Antonio Faccioli","orcid":null},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Rodrigo Faccioli","raw_affiliation_strings":["EESC-Escola de Engenharia de Sao Carlos, Universidade de Sao Paulo, Sao Carlos, Brazil","Universidade de Sao Paulo, EESC - Escola de Engenharia de Sao Carlos, Av. Trabalhador Sao Carlense, 400, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EESC-Escola de Engenharia de Sao Carlos, Universidade de Sao Paulo, Sao Carlos, Brazil","institution_ids":["https://openalex.org/I177909021","https://openalex.org/I17974374"]},{"raw_affiliation_string":"Universidade de Sao Paulo, EESC - Escola de Engenharia de Sao Carlos, Av. Trabalhador Sao Carlense, 400, Brasil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074469154","display_name":"Ivan Nunes da Silva","orcid":"https://orcid.org/0000-0002-1296-5454"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ivan Nunes da Silva","raw_affiliation_strings":["EESC-Escola de Engenharia de Sao Carlos, Universidade de Sao Paulo, Sao Carlos, Brazil","Universidade de Sao Paulo, EESC - Escola de Engenharia de Sao Carlos, Av. Trabalhador Sao Carlense, 400, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EESC-Escola de Engenharia de Sao Carlos, Universidade de Sao Paulo, Sao Carlos, Brazil","institution_ids":["https://openalex.org/I177909021","https://openalex.org/I17974374"]},{"raw_affiliation_string":"Universidade de Sao Paulo, EESC - Escola de Engenharia de Sao Carlos, Av. Trabalhador Sao Carlense, 400, Brasil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054067127","display_name":"Leandro Oliveira Bortot","orcid":"https://orcid.org/0000-0002-0915-8205"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Leandro Oliveira Bortot","raw_affiliation_strings":["FCFRP-Departamento de Fisica e Quimica, Universidade de Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil","Universidade de Sao Paulo, FCFRP - Departamento de Fisica e Quimica, Av. Do Cafe, S/N, 14040-903 - Ribeirao Preto, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FCFRP-Departamento de Fisica e Quimica, Universidade de Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Universidade de Sao Paulo, FCFRP - Departamento de Fisica e Quimica, Av. Do Cafe, S/N, 14040-903 - Ribeirao Preto, Brasil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084551356","display_name":"Alexandre C. B. Delbem","orcid":"https://orcid.org/0000-0003-1810-1742"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210131883","display_name":"Brazilian Society of Computational and Applied Mathematics","ror":"https://ror.org/03kcw4w74","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210131883"]}],"countries":["BR","ES"],"is_corresponding":false,"raw_author_name":"A. C. B. Delbem","raw_affiliation_strings":["ICMC-Instituto de Ciencias Matematicas e de Computacao, Universidade de Sao Paulo, Sao Carlos, Brazil","Universidade de Sao Paulo, ICMC - Instituto de Ciencias Matematicas e de Computacao, Av. Trabalhador Sao Carlense, 400, Sao Carlos, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICMC-Instituto de Ciencias Matematicas e de Computacao, Universidade de Sao Paulo, Sao Carlos, Brazil","institution_ids":["https://openalex.org/I4210131883","https://openalex.org/I17974374"]},{"raw_affiliation_string":"Universidade de Sao Paulo, ICMC - Instituto de Ciencias Matematicas e de Computacao, Av. Trabalhador Sao Carlense, 400, Sao Carlos, Brasil","institution_ids":["https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5375,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.64605396,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"31","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.7048591375350952},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6674783825874329},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.6063960194587708},{"id":"https://openalex.org/keywords/replica","display_name":"Replica","score":0.6035357713699341},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.5998935699462891},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5384580492973328},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.41683119535446167},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.41468262672424316},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2545413672924042},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1720317304134369},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09934714436531067}],"concepts":[{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.7048591375350952},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6674783825874329},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.6063960194587708},{"id":"https://openalex.org/C2775937380","wikidata":"https://www.wikidata.org/wiki/Q1232589","display_name":"Replica","level":2,"score":0.6035357713699341},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.5998935699462891},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5384580492973328},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.41683119535446167},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.41468262672424316},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2545413672924042},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1720317304134369},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09934714436531067},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2012.6256625","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2012.6256625","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W113688923","https://openalex.org/W1493363674","https://openalex.org/W1607931568","https://openalex.org/W1857017278","https://openalex.org/W1967734507","https://openalex.org/W1968097838","https://openalex.org/W1975017420","https://openalex.org/W1982002436","https://openalex.org/W1985903340","https://openalex.org/W1992739911","https://openalex.org/W2003451283","https://openalex.org/W2027978582","https://openalex.org/W2030848865","https://openalex.org/W2036826180","https://openalex.org/W2042694939","https://openalex.org/W2045777307","https://openalex.org/W2052038479","https://openalex.org/W2052706878","https://openalex.org/W2065232574","https://openalex.org/W2076372067","https://openalex.org/W2084493621","https://openalex.org/W2089980489","https://openalex.org/W2104078482","https://openalex.org/W2114850508","https://openalex.org/W2122199548","https://openalex.org/W2122649890","https://openalex.org/W2128607364","https://openalex.org/W2128709101","https://openalex.org/W2129020329","https://openalex.org/W2152013549","https://openalex.org/W2153597830","https://openalex.org/W2154808242","https://openalex.org/W2163333444","https://openalex.org/W2163891396","https://openalex.org/W2164655924","https://openalex.org/W2171268876","https://openalex.org/W2318579846","https://openalex.org/W2484714924","https://openalex.org/W2910372400","https://openalex.org/W3023540311","https://openalex.org/W3105804567","https://openalex.org/W4211232835","https://openalex.org/W4255988860","https://openalex.org/W6636237541","https://openalex.org/W6645714529"],"related_works":["https://openalex.org/W4383473016","https://openalex.org/W1433532214","https://openalex.org/W2039679484","https://openalex.org/W1564749278","https://openalex.org/W2557251634","https://openalex.org/W1885320193","https://openalex.org/W2013950502","https://openalex.org/W2181530468","https://openalex.org/W3177828909","https://openalex.org/W2141010032"],"abstract_inverted_index":{"The":[0,58],"Protein":[1],"Structure":[2],"Prediction":[3],"(PSP)":[4],"problem":[5],"is":[6,24],"concerned":[7],"about":[8],"the":[9,12,44],"prediction":[10],"of":[11,15,46,60],"native":[13],"structure":[14],"a":[16,25],"protein":[17],"from":[18],"its":[19],"amino":[20],"acid":[21],"sequence.":[22],"PSP":[23],"challenging":[26],"and":[27,34,55,77],"computationally":[28],"open":[29],"problem.":[30],"Therefore,":[31],"several":[32],"researches":[33],"methodologies":[35],"have":[36],"been":[37],"developed":[38],"for":[39,51],"it.":[40],"This":[41],"paper":[42],"presents":[43],"application":[45],"protpred-GROMACS,":[47],"an":[48],"evolutionary":[49,71],"framework":[50],"PSP,":[52],"in":[53],"structural":[54],"energetic":[56],"contexts.":[57],"performance":[59],"mono-objective":[61],"algorithm":[62],"was":[63],"compared":[64],"with":[65],"other":[66],"methodologies,":[67],"such":[68],"as":[69],"multi-objective":[70],"algorithm,":[72],"coarse":[73],"grained":[74],"monte":[75],"carlo":[76],"replica":[78],"exchange":[79],"molecular":[80],"dynamics.":[81]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
