{"id":"https://openalex.org/W2052852933","doi":"https://doi.org/10.1109/cec.2012.6256146","title":"Optimization of multiple sequence alignment methodologies using a multiobjective evolutionary algorithm based on NSGA-II","display_name":"Optimization of multiple sequence alignment methodologies using a multiobjective evolutionary algorithm based on NSGA-II","publication_year":2012,"publication_date":"2012-06-01","ids":{"openalex":"https://openalex.org/W2052852933","doi":"https://doi.org/10.1109/cec.2012.6256146","mag":"2052852933"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2012.6256146","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2012.6256146","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/1266077","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047036875","display_name":"Francisco Ortu\u00f1o","orcid":"https://orcid.org/0000-0001-7424-1753"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco Ortuno","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Dept of Computer Architecture and Computer Technology, University of Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Dept of Computer Architecture and Computer Technology, University of Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055657693","display_name":"Javier P\u00e9rez-Florido","orcid":"https://orcid.org/0000-0002-0223-9889"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier P. Florido","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Dept of Computer Architecture and Computer Technology, University of Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Dept of Computer Architecture and Computer Technology, University of Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068042887","display_name":"Jos\u00e9 Urquiza","orcid":"https://orcid.org/0000-0003-2220-607X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jose M. Urquiza","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Dept of Computer Architecture and Computer Technology, University of Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Dept of Computer Architecture and Computer Technology, University of Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039951150","display_name":"H. Pomares","orcid":"https://orcid.org/0000-0002-8528-828X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Hector Pomares","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Dept of Computer Architecture and Computer Technology, University of Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Dept of Computer Architecture and Computer Technology, University of Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001935513","display_name":"A. Prieto","orcid":"https://orcid.org/0000-0002-0814-6544"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alberto Prieto","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Dept of Computer Architecture and Computer Technology, University of Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Dept of Computer Architecture and Computer Technology, University of Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089029287","display_name":"Ignacio Rojas","orcid":"https://orcid.org/0000-0002-1033-5635"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Rojas","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Dept of Computer Architecture and Computer Technology, University of Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Dept of Computer Architecture and Computer Technology, University of Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I173304897"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"93","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.7237745523452759},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6730622053146362},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6412966251373291},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5954585671424866},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.545320451259613},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5098387598991394},{"id":"https://openalex.org/keywords/multi-objective-optimization","display_name":"Multi-objective optimization","score":0.4839959144592285},{"id":"https://openalex.org/keywords/evolutionary-computation","display_name":"Evolutionary computation","score":0.4836796224117279},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.443838894367218},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3309839367866516},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20332136750221252},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09705209732055664},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.06310024857521057}],"concepts":[{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.7237745523452759},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6730622053146362},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6412966251373291},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5954585671424866},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.545320451259613},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5098387598991394},{"id":"https://openalex.org/C68781425","wikidata":"https://www.wikidata.org/wiki/Q2052203","display_name":"Multi-objective optimization","level":2,"score":0.4839959144592285},{"id":"https://openalex.org/C105902424","wikidata":"https://www.wikidata.org/wiki/Q1197129","display_name":"Evolutionary computation","level":2,"score":0.4836796224117279},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.443838894367218},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3309839367866516},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20332136750221252},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09705209732055664},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.06310024857521057},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cec.2012.6256146","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2012.6256146","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},{"id":"pmh:oai:zenodo.org:1266077","is_oa":true,"landing_page_url":"https://zenodo.org/record/1266077","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:1266077","is_oa":true,"landing_page_url":"https://zenodo.org/record/1266077","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W103650626","https://openalex.org/W157482310","https://openalex.org/W1564638059","https://openalex.org/W1567621547","https://openalex.org/W1590240800","https://openalex.org/W1851749474","https://openalex.org/W1974050623","https://openalex.org/W1980913156","https://openalex.org/W2011289056","https://openalex.org/W2039878336","https://openalex.org/W2041282815","https://openalex.org/W2053238889","https://openalex.org/W2074231493","https://openalex.org/W2084052949","https://openalex.org/W2087064593","https://openalex.org/W2102941368","https://openalex.org/W2106882534","https://openalex.org/W2118028531","https://openalex.org/W2120866529","https://openalex.org/W2126105956","https://openalex.org/W2127122014","https://openalex.org/W2127774996","https://openalex.org/W2130479394","https://openalex.org/W2130940308","https://openalex.org/W2132926880","https://openalex.org/W2132972885","https://openalex.org/W2136570298","https://openalex.org/W2140872496","https://openalex.org/W2144362290","https://openalex.org/W2151509690","https://openalex.org/W2152688507","https://openalex.org/W2159638180","https://openalex.org/W2165583827","https://openalex.org/W2169602699","https://openalex.org/W4247128285"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W4297582752","https://openalex.org/W4285805405","https://openalex.org/W2906115061","https://openalex.org/W2029514038","https://openalex.org/W2977596624"],"abstract_inverted_index":{"Multiple":[0],"sequence":[1],"alignment":[2],"(MSA)":[3],"is":[4,53],"one":[5],"of":[6,58,76],"the":[7],"most":[8],"studied":[9],"approach":[10,70],"in":[11,36,55,99],"Bioinformatics":[12],"to":[13,101,107],"carry":[14],"out":[15],"other":[16,49],"outstanding":[17],"tasks":[18],"like":[19],"structural":[20],"predictions,":[21],"biological":[22],"function":[23],"analysis":[24],"or":[25],"next-generation":[26],"sequencing.":[27],"However,":[28],"MSA":[29],"algorithms":[30],"do":[31],"not":[32],"achieve":[33],"consistent":[34],"results":[35,62],"all":[37],"cases,":[38],"as":[39],"alignments":[40],"become":[41],"difficult":[42],"when":[43],"sequences":[44,59,77],"have":[45],"low":[46],"similarity.":[47],"In":[48,86],"words,":[50],"each":[51,69],"algorithm":[52,92],"focused":[54],"specific":[56],"features":[57],"and":[60],"their":[61],"depend":[63],"on":[64,94],"them.":[65],"For":[66],"this":[67,87],"reason,":[68],"could":[71],"align":[72],"better":[73],"those":[74],"sections":[75],"that":[78],"include":[79],"such":[80],"features,":[81],"obtaining":[82],"partially":[83],"optimal":[84],"solutions.":[85],"work,":[88],"a":[89],"multiobjective":[90],"evolutionary":[91],"based":[93],"NSGA-II":[95],"will":[96],"be":[97],"implemented":[98],"order":[100],"assemble":[102],"previously":[103],"aligned":[104],"sequences,":[105],"trying":[106],"avoid":[108],"suboptimal":[109],"alignments.":[110]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2014,"cited_by_count":5}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
