{"id":"https://openalex.org/W2123532080","doi":"https://doi.org/10.1109/cec.2011.5949902","title":"Comparing alternative energy functions for the HP model of protein structure prediction","display_name":"Comparing alternative energy functions for the HP model of protein structure prediction","publication_year":2011,"publication_date":"2011-06-01","ids":{"openalex":"https://openalex.org/W2123532080","doi":"https://doi.org/10.1109/cec.2011.5949902","mag":"2123532080"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2011.5949902","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2011.5949902","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Congress of Evolutionary Computation (CEC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066395629","display_name":"Mario Garza-Fabre","orcid":"https://orcid.org/0000-0002-7737-3011"},"institutions":[{"id":"https://openalex.org/I68368234","display_name":"Center for Research and Advanced Studies of the National Polytechnic Institute","ror":"https://ror.org/009eqmr18","country_code":"MX","type":"facility","lineage":["https://openalex.org/I59361560","https://openalex.org/I68368234"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Mario Garza-Fabre","raw_affiliation_strings":["Information Technology Laboratory, Parque, Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, CINVESTAV, Ciudad Victoria, Tamaulipas, Mexico","Information Technology Laboratory, CINVESTAV-Tamaulipas, Parque Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, Cd. Victoria, Tamaulipas 87130, Mexico#TAB#"],"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, Parque, Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, CINVESTAV, Ciudad Victoria, Tamaulipas, Mexico","institution_ids":[]},{"raw_affiliation_string":"Information Technology Laboratory, CINVESTAV-Tamaulipas, Parque Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, Cd. Victoria, Tamaulipas 87130, Mexico#TAB#","institution_ids":["https://openalex.org/I68368234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104438053","display_name":"Eduardo Rodr\u00edguez-Tello","orcid":"https://orcid.org/0000-0002-0333-0633"},"institutions":[{"id":"https://openalex.org/I68368234","display_name":"Center for Research and Advanced Studies of the National Polytechnic Institute","ror":"https://ror.org/009eqmr18","country_code":"MX","type":"facility","lineage":["https://openalex.org/I59361560","https://openalex.org/I68368234"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Eduardo Rodriguez-Tello","raw_affiliation_strings":["Information Technology Laboratory, Parque, Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, CINVESTAV, Ciudad Victoria, Tamaulipas, Mexico","Information Technology Laboratory, CINVESTAV-Tamaulipas, Parque Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, Cd. Victoria, Tamaulipas 87130, Mexico#TAB#"],"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, Parque, Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, CINVESTAV, Ciudad Victoria, Tamaulipas, Mexico","institution_ids":[]},{"raw_affiliation_string":"Information Technology Laboratory, CINVESTAV-Tamaulipas, Parque Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, Cd. Victoria, Tamaulipas 87130, Mexico#TAB#","institution_ids":["https://openalex.org/I68368234"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046224413","display_name":"Gregorio Toscano\u2010Pulido","orcid":"https://orcid.org/0000-0001-5311-8027"},"institutions":[{"id":"https://openalex.org/I68368234","display_name":"Center for Research and Advanced Studies of the National Polytechnic Institute","ror":"https://ror.org/009eqmr18","country_code":"MX","type":"facility","lineage":["https://openalex.org/I59361560","https://openalex.org/I68368234"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Gregorio Toscano-Pulido","raw_affiliation_strings":["Information Technology Laboratory, Parque, Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, CINVESTAV, Ciudad Victoria, Tamaulipas, Mexico","Information Technology Laboratory, CINVESTAV-Tamaulipas, Parque Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, Cd. Victoria, Tamaulipas 87130, Mexico#TAB#"],"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, Parque, Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, CINVESTAV, Ciudad Victoria, Tamaulipas, Mexico","institution_ids":[]},{"raw_affiliation_string":"Information Technology Laboratory, CINVESTAV-Tamaulipas, Parque Cient\u00edfico y Tecnol\u00f3gico TECNOTAM, Km. 5.5 carretera Cd. Victoria-Soto La Marina, Cd. Victoria, Tamaulipas 87130, Mexico#TAB#","institution_ids":["https://openalex.org/I68368234"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066395629"],"corresponding_institution_ids":["https://openalex.org/I68368234"],"apc_list":null,"apc_paid":null,"fwci":0.6514,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.68651396,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"1","issue":null,"first_page":"2307","last_page":"2314"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.658585786819458},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6343466639518738},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5629361867904663},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5244576930999756},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.5188385248184204},{"id":"https://openalex.org/keywords/memetic-algorithm","display_name":"Memetic algorithm","score":0.5054211616516113},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.4981689453125},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.40302547812461853},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3785369396209717},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3352373540401459},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.27309101819992065},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2180475890636444}],"concepts":[{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.658585786819458},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6343466639518738},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5629361867904663},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5244576930999756},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.5188385248184204},{"id":"https://openalex.org/C35129592","wikidata":"https://www.wikidata.org/wiki/Q324793","display_name":"Memetic algorithm","level":3,"score":0.5054211616516113},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.4981689453125},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.40302547812461853},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3785369396209717},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3352373540401459},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.27309101819992065},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2180475890636444},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2011.5949902","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2011.5949902","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Congress of Evolutionary Computation (CEC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"},{"id":"https://openalex.org/F4320337573","display_name":"Information Technology Laboratory","ror":"https://ror.org/0440c3437"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W18216792","https://openalex.org/W40071341","https://openalex.org/W397102730","https://openalex.org/W1483822498","https://openalex.org/W1489848052","https://openalex.org/W1538175494","https://openalex.org/W1984527736","https://openalex.org/W2013842855","https://openalex.org/W2024819664","https://openalex.org/W2026980998","https://openalex.org/W2036239645","https://openalex.org/W2045777307","https://openalex.org/W2072119678","https://openalex.org/W2079087579","https://openalex.org/W2080382112","https://openalex.org/W2095111795","https://openalex.org/W2101206889","https://openalex.org/W2137105118","https://openalex.org/W2138897464","https://openalex.org/W2139196352","https://openalex.org/W2330766527","https://openalex.org/W2611927968","https://openalex.org/W4299535408","https://openalex.org/W6600754543","https://openalex.org/W6629133029"],"related_works":["https://openalex.org/W2010336970","https://openalex.org/W4205193211","https://openalex.org/W2789681586","https://openalex.org/W2794361564","https://openalex.org/W3034364924","https://openalex.org/W3196925172","https://openalex.org/W3091613133","https://openalex.org/W2147204676","https://openalex.org/W2787833928","https://openalex.org/W2888489529"],"abstract_inverted_index":{"Protein":[0],"structure":[1],"prediction":[2],"is":[3,24,37,88,171],"the":[4,8,33,40,45,69,75,109,122,132,140,149,160,172],"problem":[5,56],"of":[6,11,28,39,74,124,126,134,139,151,162],"finding":[7],"functional":[9],"conformation":[10],"a":[12,52,152],"protein":[13,46],"given":[14],"only":[15],"its":[16],"amino":[17],"acid":[18],"sequence.":[19],"The":[20,156],"HP":[21,76],"lattice":[22],"model":[23,50,77],"an":[25,81,89,98],"abstract":[26],"formulation":[27],"this":[29,114,117,164,170,177],"problem,":[30],"which":[31,87],"captures":[32],"fact":[34],"that":[35],"hydrophobicity":[36],"one":[38],"major":[41],"driving":[42],"forces":[43],"in":[44,94,108,176],"folding":[47],"process.":[48],"This":[49],"represents":[51],"hard":[53],"combinatorial":[54],"optimization":[55],"and":[57],"has":[58],"been":[59,106],"widely":[60],"addressed":[61],"through":[62],"metaheuristics":[63,93],"such":[64,127],"as":[65,143,145],"evolutionary":[66],"algorithms.":[67],"However,":[68],"conventional":[70],"energy":[71,103],"(evaluation)":[72],"function":[73],"does":[78],"not":[79],"provide":[80],"adequate":[82],"discrimination":[83,135],"among":[84],"potential":[85],"solutions,":[86],"essential":[90],"requirement":[91],"for":[92],"order":[95],"to":[96,111],"perform":[97],"effective":[99],"search.":[100],"Therefore,":[101],"alternative":[102,128],"functions":[104,142],"have":[105],"proposed":[107],"literature":[110],"cope":[112],"with":[113],"issue.":[115],"In":[116],"study,":[118],"we":[119],"inquire":[120],"into":[121],"effectiveness":[123],"several":[125],"approaches.":[129],"We":[130],"analyzed":[131],"degree":[133],"provided":[136],"by":[137],"each":[138],"studied":[141],"well":[144],"their":[146],"impact":[147],"on":[148],"behavior":[150],"basic":[153],"memetic":[154],"algorithm.":[155],"obtained":[157],"results":[158],"support":[159],"relevance":[161],"following":[163],"research":[165],"direction.":[166],"To":[167],"our":[168],"knowledge,":[169],"first":[173],"work":[174],"reported":[175],"regard.":[178]},"counts_by_year":[{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
