{"id":"https://openalex.org/W2067661081","doi":"https://doi.org/10.1109/cec.2010.5586339","title":"Binary-Organoid Particle Swarm optimisation for inferring genetic networks","display_name":"Binary-Organoid Particle Swarm optimisation for inferring genetic networks","publication_year":2010,"publication_date":"2010-07-01","ids":{"openalex":"https://openalex.org/W2067661081","doi":"https://doi.org/10.1109/cec.2010.5586339","mag":"2067661081"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2010.5586339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2010.5586339","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009004956","display_name":"Santi S. Chanthaphavong","orcid":null},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Santi S. Chanthaphavong","raw_affiliation_strings":["Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Churchill, Australia","Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Gippsland Campus, Churchill 3842, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Churchill, Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Gippsland Campus, Churchill 3842, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070425791","display_name":"Madhu Chetty","orcid":"https://orcid.org/0000-0001-7052-0413"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Madhu Chetty","raw_affiliation_strings":["Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Churchill, Australia","Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Gippsland Campus, Churchill 3842, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Churchill, Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Gippsland School of Information Technology, Faculty of Information Technology, Monash University, Gippsland Campus, Churchill 3842, Australia","institution_ids":["https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I56590836"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.16881406,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"5","issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/swarm-behaviour","display_name":"Swarm behaviour","score":0.6950670480728149},{"id":"https://openalex.org/keywords/particle-swarm-optimization","display_name":"Particle swarm optimization","score":0.6694036722183228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6044632196426392},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.5780237317085266},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.5690473914146423},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5535196661949158},{"id":"https://openalex.org/keywords/convergence","display_name":"Convergence (economics)","score":0.5532870292663574},{"id":"https://openalex.org/keywords/swarm-intelligence","display_name":"Swarm intelligence","score":0.4785250425338745},{"id":"https://openalex.org/keywords/multi-swarm-optimization","display_name":"Multi-swarm optimization","score":0.4665284752845764},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39716386795043945},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3001641035079956},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21233424544334412},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11160966753959656}],"concepts":[{"id":"https://openalex.org/C181335050","wikidata":"https://www.wikidata.org/wiki/Q14915018","display_name":"Swarm behaviour","level":2,"score":0.6950670480728149},{"id":"https://openalex.org/C85617194","wikidata":"https://www.wikidata.org/wiki/Q2072794","display_name":"Particle swarm optimization","level":2,"score":0.6694036722183228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6044632196426392},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.5780237317085266},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.5690473914146423},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5535196661949158},{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.5532870292663574},{"id":"https://openalex.org/C119487961","wikidata":"https://www.wikidata.org/wiki/Q863960","display_name":"Swarm intelligence","level":3,"score":0.4785250425338745},{"id":"https://openalex.org/C122357587","wikidata":"https://www.wikidata.org/wiki/Q6934508","display_name":"Multi-swarm optimization","level":3,"score":0.4665284752845764},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39716386795043945},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3001641035079956},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21233424544334412},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11160966753959656},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cec.2010.5586339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2010.5586339","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},{"id":"pmh:vital:5943","is_oa":false,"landing_page_url":"http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/46063","pdf_url":null,"source":{"id":"https://openalex.org/S4306400234","display_name":"FedUni ResearchOnline (Federation University Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210158496","host_organization_name":"Australian Federation of University Women \u2013 South Australia","host_organization_lineage":["https://openalex.org/I4210158496"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference paper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":82,"referenced_works":["https://openalex.org/W89551800","https://openalex.org/W589928166","https://openalex.org/W1514205146","https://openalex.org/W1522114398","https://openalex.org/W1523793568","https://openalex.org/W1572475128","https://openalex.org/W1576426930","https://openalex.org/W1577668191","https://openalex.org/W1580876177","https://openalex.org/W1585280831","https://openalex.org/W1585303438","https://openalex.org/W1587150650","https://openalex.org/W1615454278","https://openalex.org/W1698663318","https://openalex.org/W1967208663","https://openalex.org/W1968908999","https://openalex.org/W1969547738","https://openalex.org/W1988814833","https://openalex.org/W1990411923","https://openalex.org/W1993061726","https://openalex.org/W2003516452","https://openalex.org/W2004608252","https://openalex.org/W2005486846","https://openalex.org/W2008107402","https://openalex.org/W2008906462","https://openalex.org/W2017234250","https://openalex.org/W2038078441","https://openalex.org/W2040575507","https://openalex.org/W2046538693","https://openalex.org/W2055214702","https://openalex.org/W2079829409","https://openalex.org/W2081793676","https://openalex.org/W2082982706","https://openalex.org/W2090554117","https://openalex.org/W2096863518","https://openalex.org/W2099380913","https://openalex.org/W2099661085","https://openalex.org/W2102954583","https://openalex.org/W2103453943","https://openalex.org/W2108388069","https://openalex.org/W2109364787","https://openalex.org/W2111331477","https://openalex.org/W2111393363","https://openalex.org/W2116721327","https://openalex.org/W2125213524","https://openalex.org/W2130721915","https://openalex.org/W2136988691","https://openalex.org/W2137883630","https://openalex.org/W2142390772","https://openalex.org/W2145590522","https://openalex.org/W2147312112","https://openalex.org/W2152195021","https://openalex.org/W2157107726","https://openalex.org/W2160533336","https://openalex.org/W2165299997","https://openalex.org/W2167155713","https://openalex.org/W2169245194","https://openalex.org/W2170653744","https://openalex.org/W2505405838","https://openalex.org/W2545906690","https://openalex.org/W2611370172","https://openalex.org/W2917431650","https://openalex.org/W2974701791","https://openalex.org/W4231506434","https://openalex.org/W4236354166","https://openalex.org/W4253895991","https://openalex.org/W4285719527","https://openalex.org/W4302423442","https://openalex.org/W6603643435","https://openalex.org/W6631248627","https://openalex.org/W6634715273","https://openalex.org/W6635040494","https://openalex.org/W6635147717","https://openalex.org/W6635196568","https://openalex.org/W6636455871","https://openalex.org/W6637293442","https://openalex.org/W6647596492","https://openalex.org/W6648526897","https://openalex.org/W6671346601","https://openalex.org/W6673567362","https://openalex.org/W6674964530","https://openalex.org/W6676727189"],"related_works":["https://openalex.org/W4308079021","https://openalex.org/W2006324351","https://openalex.org/W2965421953","https://openalex.org/W2133833450","https://openalex.org/W1527337688","https://openalex.org/W2349895019","https://openalex.org/W2399799070","https://openalex.org/W2746377055","https://openalex.org/W4386001959","https://openalex.org/W2070977815"],"abstract_inverted_index":{"A":[0],"holistic":[1],"understanding":[2],"of":[3,11,26,28,69,91,140],"genetic":[4,53],"interactions":[5,54],"is":[6,37,64],"crucial":[7],"in":[8],"the":[9,18,52,56,70,89,133],"analysis":[10],"complex":[12],"biological":[13],"systems.":[14],"However,":[15],"due":[16],"to":[17,98,120],"dimensionality":[19],"problem":[20],"(less":[21],"samples":[22],"and":[23,95,122],"large":[24],"number":[25],"genes)":[27],"microarray":[29],"data,":[30],"obtaining":[31],"an":[32],"optimal":[33],"gene":[34],"regulatory":[35],"network":[36,71],"not":[38],"only":[39],"difficult":[40],"but":[41],"also":[42],"computationally":[43],"expensive.":[44],"In":[45,85,127],"this":[46],"paper,":[47],"a":[48,61,75],"Bayesian":[49],"model":[50],"for":[51],"using":[55,107],"Minimum":[57],"Description":[58],"Length":[59],"as":[60],"scoring":[62],"metric":[63],"proposed.":[65],"For":[66],"fast":[67,130],"optimisation":[68],"structure,":[72],"we":[73,87],"propose":[74],"novel":[76],"Swarm":[77,83],"Intelligence":[78],"algorithm":[79],"called":[80],"Binary-Organoid":[81],"Particle":[82],"(BORG-Swarm).":[84],"BORG-Swarm":[86],"introduce":[88],"concepts":[90],"probability":[92],"threshold":[93],"vector":[94],"particle":[96,100],"drift":[97],"update":[99],"positions.":[101],"Experimental":[102],"studies":[103],"are":[104],"carried":[105],"out":[106],"real-life":[108],"yeast":[109],"cell":[110],"cycle":[111],"dataset.":[112],"Results":[113],"indicate":[114],"that":[115],"existing":[116],"binary":[117],"swarms":[118],"fail":[119],"converge":[121],"suffer":[123],"from":[124,138],"long":[125],"runtimes.":[126],"constrast,":[128],"BORG-Swarm's":[129],"convergence":[131],"towards":[132],"global":[134],"optimum":[135],"becomes":[136],"apparent":[137],"results":[139],"extensive":[141],"simulations.":[142]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
