{"id":"https://openalex.org/W2107598115","doi":"https://doi.org/10.1109/cec.2007.4424978","title":"A co-evolutionary framework for regulatory motif discovery","display_name":"A co-evolutionary framework for regulatory motif discovery","publication_year":2007,"publication_date":"2007-09-01","ids":{"openalex":"https://openalex.org/W2107598115","doi":"https://doi.org/10.1109/cec.2007.4424978","mag":"2107598115"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2007.4424978","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2007.4424978","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049325379","display_name":"Michael A. Lones","orcid":"https://orcid.org/0000-0002-2745-9896"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael A. Lones","raw_affiliation_strings":["The Intelligent Systems Research Group, Department of Electronics, University of York, York, UK","University of York  York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Intelligent Systems Research Group, Department of Electronics, University of York, York, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"University of York  York","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048789717","display_name":"Andy M. Tyrrell","orcid":"https://orcid.org/0000-0002-8533-2404"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andy M. Tyrrell","raw_affiliation_strings":["The Intelligent Systems Research Group, Department of Electronics, University of York, York, UK","University of York  York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Intelligent Systems Research Group, Department of Electronics, University of York, York, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"University of York  York","institution_ids":["https://openalex.org/I52099693"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I52099693"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2723","issue":null,"first_page":"3894","last_page":"3901"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.7488027811050415},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5967682600021362},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.5928249955177307},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5462626218795776},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5287789106369019},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4539882242679596},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4516328275203705},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4026588797569275},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3600272536277771},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34358087182044983},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3263978958129883},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23142945766448975}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.7488027811050415},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5967682600021362},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.5928249955177307},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5462626218795776},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5287789106369019},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4539882242679596},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4516328275203705},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4026588797569275},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3600272536277771},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34358087182044983},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3263978958129883},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23142945766448975},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cec.2007.4424978","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2007.4424978","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.205.4885","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.205.4885","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-users.york.ac.uk/%7Emal503/common/papers/lones-cec2007.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W167899937","https://openalex.org/W216294374","https://openalex.org/W1488285593","https://openalex.org/W1493147015","https://openalex.org/W1972857806","https://openalex.org/W1993037008","https://openalex.org/W1997520292","https://openalex.org/W2012597404","https://openalex.org/W2012993065","https://openalex.org/W2068011423","https://openalex.org/W2068135787","https://openalex.org/W2084620487","https://openalex.org/W2091230759","https://openalex.org/W2099612780","https://openalex.org/W2100211715","https://openalex.org/W2103447044","https://openalex.org/W2106588364","https://openalex.org/W2109553965","https://openalex.org/W2115979107","https://openalex.org/W2122232025","https://openalex.org/W2126558916","https://openalex.org/W2133147430","https://openalex.org/W2134307042","https://openalex.org/W2134371225","https://openalex.org/W2141408320","https://openalex.org/W2142619464","https://openalex.org/W2149312834","https://openalex.org/W2156040591","https://openalex.org/W2159805763","https://openalex.org/W2166898290","https://openalex.org/W2168327391","https://openalex.org/W2913066018","https://openalex.org/W4252521233","https://openalex.org/W6608579697","https://openalex.org/W6629126236"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2073661767","https://openalex.org/W2143211236","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2159636084","https://openalex.org/W2610941444","https://openalex.org/W2117168988","https://openalex.org/W2154430121","https://openalex.org/W2103777723"],"abstract_inverted_index":{"In":[0,31],"previous":[1],"work,":[2],"we":[3,34],"have":[4],"shown":[5],"how":[6],"an":[7,70],"evolutionary":[8],"algorithm":[9,37,88],"with":[10,48,98],"a":[11,40,103],"clustered":[12],"population":[13,41,77],"can":[14],"be":[15,65],"used":[16],"to":[17,64,91],"concurrently":[18],"discover":[19],"multiple":[20],"regulatory":[21],"motifs":[22,63],"present":[23],"within":[24,110],"the":[25,36,49,87],"promoter":[26,68,84],"sequences":[27,69],"of":[28,42,72],"co-expressed":[29],"genes.":[30],"this":[32,58],"paper,":[33],"extend":[35],"by":[38],"co-evolving":[39],"Boolean":[43],"classification":[44],"rules":[45],"in":[46,67,96],"parallel":[47,97],"motif":[50,108],"population.":[51],"Results":[52],"using":[53,76,82],"synthetic":[54],"data":[55,85],"suggest":[56],"that":[57,100],"approach":[59],"allows":[60],"poorly":[61],"conserved":[62],"identified":[66],"order":[71],"magnitude":[73],"longer":[74],"than":[75],"clustering":[78],"alone,":[79],"whilst":[80],"results":[81],"muscle-specific":[83],"show":[86],"is":[89],"able":[90],"evolve":[92],"meaningful":[93],"sequence":[94],"classifiers":[95],"motifs-suggesting":[99],"co-evolution":[101],"provides":[102],"suitable":[104],"framework":[105],"for":[106],"composite":[107],"discovery":[109],"eukaryotic":[111],"sequences.":[112]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
