{"id":"https://openalex.org/W1488923640","doi":"https://doi.org/10.1109/cec.2005.1554667","title":"Assembling DNA Fragments with Parallel Algorithms","display_name":"Assembling DNA Fragments with Parallel Algorithms","publication_year":2005,"publication_date":"2005-12-13","ids":{"openalex":"https://openalex.org/W1488923640","doi":"https://doi.org/10.1109/cec.2005.1554667","mag":"1488923640"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2005.1554667","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2005.1554667","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2005 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019440355","display_name":"Enrique Alba","orcid":"https://orcid.org/0000-0002-5520-8875"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"E. Alba","raw_affiliation_strings":["Dpto. de Lenguajes y Ciencias de la Computaci\u00f3n, E.T.S.I. Inform\u00e1tica, Malaga, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. de Lenguajes y Ciencias de la Computaci\u00f3n, E.T.S.I. Inform\u00e1tica, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007483425","display_name":"Gabriel Luque","orcid":"https://orcid.org/0000-0001-7909-1416"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"G. Luque","raw_affiliation_strings":["Dpto. de Lenguajes y Ciencias de la Computaci\u00f3n, E.T.S.I. Inform\u00e1tica, Malaga, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. de Lenguajes y Ciencias de la Computaci\u00f3n, E.T.S.I. Inform\u00e1tica, Malaga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109849624","display_name":"Sami Khuri","orcid":null},"institutions":[{"id":"https://openalex.org/I51504820","display_name":"San Jose State University","ror":"https://ror.org/04qyvz380","country_code":"US","type":"education","lineage":["https://openalex.org/I51504820"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Khuri","raw_affiliation_strings":["Department of Computer Science, San Jos\u00e9 State University, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, San Jos\u00e9 State University, San Jose, CA, USA","institution_ids":["https://openalex.org/I51504820"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8848,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.70483745,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"1","issue":null,"first_page":"57","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.6633257269859314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6245623826980591},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6092474460601807},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.5891566872596741},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.5872181057929993},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.5815737247467041},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.5396000146865845},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5107429027557373},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4817616939544678},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3677637577056885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16563090682029724},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1614271104335785},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07025909423828125}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.6633257269859314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6245623826980591},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6092474460601807},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5891566872596741},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.5872181057929993},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.5815737247467041},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.5396000146865845},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5107429027557373},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4817616939544678},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3677637577056885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16563090682029724},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1614271104335785},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07025909423828125},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2005.1554667","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2005.1554667","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2005 IEEE Congress on Evolutionary Computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W39578891","https://openalex.org/W1490430289","https://openalex.org/W1494346961","https://openalex.org/W1497256448","https://openalex.org/W1549497776","https://openalex.org/W1550894544","https://openalex.org/W1568834902","https://openalex.org/W1589993665","https://openalex.org/W1965434026","https://openalex.org/W1970939265","https://openalex.org/W1987069789","https://openalex.org/W2024060531","https://openalex.org/W2081217268","https://openalex.org/W2081822979","https://openalex.org/W2096195187","https://openalex.org/W2102941368","https://openalex.org/W2159497035","https://openalex.org/W2166265186","https://openalex.org/W2166348281","https://openalex.org/W2745152877","https://openalex.org/W6601591268","https://openalex.org/W6629711858","https://openalex.org/W6632853050"],"related_works":["https://openalex.org/W2008090296","https://openalex.org/W2213265806","https://openalex.org/W2166654698","https://openalex.org/W2165847428","https://openalex.org/W2043714862","https://openalex.org/W2166973401","https://openalex.org/W2047803783","https://openalex.org/W2157460239","https://openalex.org/W2120349185","https://openalex.org/W2164536081"],"abstract_inverted_index":{"As":[0],"more":[1],"research":[2],"centers":[3],"embark":[4],"on":[5],"sequencing":[6,17,34],"new":[7],"genomes,":[8],"the":[9,38,61,66],"problem":[10,42,102],"of":[11,32],"DNA":[12,39,81],"fragment":[13,40,62],"assembly":[14,27,41,63],"for":[15,59],"shotgun":[16],"is":[18,28,43,75],"growing":[19],"in":[20],"importance":[21],"and":[22,25,36,95],"complexity.":[23],"Accurate":[24],"fast":[26],"a":[29,91,96],"crucial":[30],"part":[31],"any":[33],"project":[35],"since":[37],"NP-hard,":[44],"exact":[45],"solutions":[46],"are":[47,105],"very":[48,79],"difficult":[49],"to":[50,77,100],"obtain.":[51],"Various":[52],"heuristics,":[53],"including":[54],"genetic":[55,68,93],"algorithms,":[56],"were":[57],"designed":[58],"solving":[60],"problem.":[64],"While":[65],"sequential":[67],"algorithm":[69,94],"has":[70],"given":[71],"good":[72],"results,":[73],"it":[74],"unable":[76],"sequence":[78],"large":[80],"molecules.":[82],"In":[83],"this":[84],"work,":[85],"we":[86],"present":[87],"two":[88],"parallel":[89,97],"methods,":[90],"distributed":[92],"simulated":[98],"annealing,":[99],"solve":[101],"instances":[103],"that":[104],"77K":[106],"base":[107],"pairs":[108],"long":[109],"accurately":[110]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
