{"id":"https://openalex.org/W2104662449","doi":"https://doi.org/10.1109/cec.2004.1331150","title":"An evolutionary algorithm taking account of mutual interactions among substances for inference of genetic networks","display_name":"An evolutionary algorithm taking account of mutual interactions among substances for inference of genetic networks","publication_year":2005,"publication_date":"2005-01-17","ids":{"openalex":"https://openalex.org/W2104662449","doi":"https://doi.org/10.1109/cec.2004.1331150","mag":"2104662449"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2004.1331150","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2004.1331150","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2004 Congress on Evolutionary Computation (IEEE Cat. No.04TH8753)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085725359","display_name":"Isao Ono","orcid":"https://orcid.org/0009-0008-2110-9853"},"institutions":[{"id":"https://openalex.org/I922474255","display_name":"Tokushima University","ror":"https://ror.org/044vy1d05","country_code":"JP","type":"education","lineage":["https://openalex.org/I922474255"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"I. Ono","raw_affiliation_strings":["University of Tokushima, Tokushima, Japan","Tokushima University, Japan"],"affiliations":[{"raw_affiliation_string":"University of Tokushima, Tokushima, Japan","institution_ids":["https://openalex.org/I922474255"]},{"raw_affiliation_string":"Tokushima University, Japan","institution_ids":["https://openalex.org/I922474255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089927352","display_name":"Y. Seike","orcid":null},"institutions":[{"id":"https://openalex.org/I922474255","display_name":"Tokushima University","ror":"https://ror.org/044vy1d05","country_code":"JP","type":"education","lineage":["https://openalex.org/I922474255"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Seike","raw_affiliation_strings":["University of Tokushima, Tokushima, Japan","Tokushima University, Japan"],"affiliations":[{"raw_affiliation_string":"University of Tokushima, Tokushima, Japan","institution_ids":["https://openalex.org/I922474255"]},{"raw_affiliation_string":"Tokushima University, Japan","institution_ids":["https://openalex.org/I922474255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090369265","display_name":"R. Morishita","orcid":null},"institutions":[{"id":"https://openalex.org/I922474255","display_name":"Tokushima University","ror":"https://ror.org/044vy1d05","country_code":"JP","type":"education","lineage":["https://openalex.org/I922474255"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"R. Morishita","raw_affiliation_strings":["University of Tokushima, Tokushima, Japan","Tokushima University, Japan"],"affiliations":[{"raw_affiliation_string":"University of Tokushima, Tokushima, Japan","institution_ids":["https://openalex.org/I922474255"]},{"raw_affiliation_string":"Tokushima University, Japan","institution_ids":["https://openalex.org/I922474255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057392144","display_name":"Norihiko Ono","orcid":null},"institutions":[{"id":"https://openalex.org/I922474255","display_name":"Tokushima University","ror":"https://ror.org/044vy1d05","country_code":"JP","type":"education","lineage":["https://openalex.org/I922474255"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"N. Ono","raw_affiliation_strings":["University of Tokushima, Tokushima, Japan","Tokushima University, Japan"],"affiliations":[{"raw_affiliation_string":"University of Tokushima, Tokushima, Japan","institution_ids":["https://openalex.org/I922474255"]},{"raw_affiliation_string":"Tokushima University, Japan","institution_ids":["https://openalex.org/I922474255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091525968","display_name":"Masahiko Nakatsui","orcid":"https://orcid.org/0000-0001-6531-5220"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Nakatsui","raw_affiliation_strings":["Kyushu University, Higashi, Fukuoka, Japan","Kyushu University"],"affiliations":[{"raw_affiliation_string":"Kyushu University, Higashi, Fukuoka, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Kyushu University","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015749138","display_name":"M Okamoto","orcid":"https://orcid.org/0009-0007-4426-8366"},"institutions":[{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP","US"],"is_corresponding":false,"raw_author_name":"M. Okamoto","raw_affiliation_strings":["Kyushu University, Higashi, Fukuoka, Japan","Systems Biology"],"affiliations":[{"raw_affiliation_string":"Kyushu University, Higashi, Fukuoka, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Systems Biology","institution_ids":["https://openalex.org/I4210155419"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5085725359"],"corresponding_institution_ids":["https://openalex.org/I922474255"],"apc_list":null,"apc_paid":null,"fwci":0.8615,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.71387388,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7496494650840759},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6692658066749573},{"id":"https://openalex.org/keywords/viewpoints","display_name":"Viewpoints","score":0.6096975803375244},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.582760751247406},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5661560297012329},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5526408553123474},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.4875466227531433},{"id":"https://openalex.org/keywords/search-problem","display_name":"Search problem","score":0.45324981212615967},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.4481196403503418},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4424445331096649},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43823596835136414},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4259685277938843},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34094640612602234},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3194640278816223}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7496494650840759},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6692658066749573},{"id":"https://openalex.org/C2776035091","wikidata":"https://www.wikidata.org/wiki/Q7928819","display_name":"Viewpoints","level":2,"score":0.6096975803375244},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.582760751247406},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5661560297012329},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5526408553123474},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.4875466227531433},{"id":"https://openalex.org/C201789804","wikidata":"https://www.wikidata.org/wiki/Q2362762","display_name":"Search problem","level":2,"score":0.45324981212615967},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.4481196403503418},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4424445331096649},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43823596835136414},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4259685277938843},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34094640612602234},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3194640278816223},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2004.1331150","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2004.1331150","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2004 Congress on Evolutionary Computation (IEEE Cat. No.04TH8753)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W46478508","https://openalex.org/W100223930","https://openalex.org/W131637771","https://openalex.org/W191962843","https://openalex.org/W1510585142","https://openalex.org/W1559547793","https://openalex.org/W1585268378","https://openalex.org/W1598590531","https://openalex.org/W1604948362","https://openalex.org/W1631185401","https://openalex.org/W2079829409","https://openalex.org/W2081999679","https://openalex.org/W2082982706","https://openalex.org/W2121937120","https://openalex.org/W2129737673","https://openalex.org/W2136605310","https://openalex.org/W2155389397","https://openalex.org/W2163296727","https://openalex.org/W2577770140","https://openalex.org/W2617450400","https://openalex.org/W6605371517","https://openalex.org/W6607777719","https://openalex.org/W6636910345","https://openalex.org/W6670268304","https://openalex.org/W6671346601","https://openalex.org/W6682743303","https://openalex.org/W6731938624","https://openalex.org/W6738920605"],"related_works":["https://openalex.org/W2368709543","https://openalex.org/W2107835995","https://openalex.org/W4213195198","https://openalex.org/W2808808802","https://openalex.org/W2998661990","https://openalex.org/W2064794194","https://openalex.org/W2354057059","https://openalex.org/W2922133901","https://openalex.org/W2008047931","https://openalex.org/W1972935601"],"abstract_inverted_index":{"We":[0,127],"improve":[1,87],"network-structure-search":[2],"evolutionary":[3],"algorithm":[4],"(NSS-EA)":[5],"that":[6,104],"is":[7,56],"a":[8,36,71,106,156],"search":[9,34,42,50,90],"method":[10,59],"for":[11,20,135],"inference":[12,21],"of":[13,22,35,38,43,51,63,76,98,105,122,131,140,147],"genetic":[14,23,111],"networks":[15,24],"by":[16,25,92,143],"S-system.":[17],"Search":[18],"methods":[19],"S-system":[26],"should":[27],"meet":[28],"the":[29,52,61,74,88,94,129,132,138,145,148,152],"following":[30],"requirements:":[31],"1)":[32],"efficient":[33],"set":[37],"satisfactory":[39],"structures;":[40],"2)":[41],"structures":[44],"satisfying":[45],"biological":[46],"knowledge;":[47],"and":[48,66,151],"3)":[49],"true":[53],"structure,":[54],"NSS-EA":[55,136,150,154],"an":[57],"excellent":[58],"from":[60,73,137],"viewpoints":[62],"Requirement":[64,77,141],"1":[65],"2.":[67],"However,":[68],"it":[69],"has":[70],"problem":[72],"viewpoint":[75,139],"3.":[78],"In":[79],"order":[80],"to":[81],"solve":[82],"this":[83],"problem,":[84],"first,":[85],"we":[86,114],"parameter":[89],"process":[91],"using":[93],"time":[95],"course":[96],"data":[97],"disrupted":[99],"strains":[100],"as":[101,103],"well":[102],"wild":[107],"type":[108],"when":[109],"evaluating":[110],"networks.":[112],"Second,":[113],"propose":[115],"four":[116],"new":[117],"structure-search":[118],"operators":[119],"taking":[120],"account":[121],"mutual":[123],"interactions":[124],"among":[125],"substances.":[126],"show":[128],"effectiveness":[130],"proposed":[133],"improvements":[134],"3":[142],"comparing":[144],"performance":[146],"original":[149],"improved":[153],"on":[155],"five-substance":[157],"benchmark":[158],"problem.":[159]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
