{"id":"https://openalex.org/W1585285264","doi":"https://doi.org/10.1109/cec.2003.1299894","title":"Improved GA-based method for multiple protein sequence alignment","display_name":"Improved GA-based method for multiple protein sequence alignment","publication_year":2004,"publication_date":"2004-07-09","ids":{"openalex":"https://openalex.org/W1585285264","doi":"https://doi.org/10.1109/cec.2003.1299894","mag":"1585285264"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2003.1299894","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2003.1299894","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2003 Congress on Evolutionary Computation, 2003. CEC '03.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028188200","display_name":"Hung D. Nguyen","orcid":"https://orcid.org/0009-0002-2649-2552"},"institutions":[{"id":"https://openalex.org/I118574687","display_name":"University of Miyazaki","ror":"https://ror.org/0447kww10","country_code":"JP","type":"education","lineage":["https://openalex.org/I118574687"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hung Dinh Nguyen","raw_affiliation_strings":["Graduate School of Engineering, Miyazaki University, Miyazaki, Japan","Graduate Sch. of Eng., Miyazaki Univ., Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Engineering, Miyazaki University, Miyazaki, Japan","institution_ids":["https://openalex.org/I118574687"]},{"raw_affiliation_string":"Graduate Sch. of Eng., Miyazaki Univ., Japan","institution_ids":["https://openalex.org/I118574687"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049562550","display_name":"Ikuo Yoshihara","orcid":null},"institutions":[{"id":"https://openalex.org/I118574687","display_name":"University of Miyazaki","ror":"https://ror.org/0447kww10","country_code":"JP","type":"education","lineage":["https://openalex.org/I118574687"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"I. Yoshihara","raw_affiliation_strings":["Faculty of Engineering, Miyazaki University, Miyazaki, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Miyazaki University, Miyazaki, Japan","institution_ids":["https://openalex.org/I118574687"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067522919","display_name":"Kunihito Yamamori","orcid":null},"institutions":[{"id":"https://openalex.org/I118574687","display_name":"University of Miyazaki","ror":"https://ror.org/0447kww10","country_code":"JP","type":"education","lineage":["https://openalex.org/I118574687"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Yamamori","raw_affiliation_strings":["Faculty of Engineering, Miyazaki University, Miyazaki, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Miyazaki University, Miyazaki, Japan","institution_ids":["https://openalex.org/I118574687"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051774299","display_name":"Masahiro Yasunaga","orcid":"https://orcid.org/0000-0003-3356-0197"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Yasunaga","raw_affiliation_strings":["Institute of Information Systems and Electronics, University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Systems and Electronics, University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7365,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.75714895,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"1826","last_page":"1832"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6328050494194031},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5525151491165161},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5444106459617615},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4386330246925354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3511887192726135},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3428362011909485},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.21551033854484558},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15892294049263},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15298205614089966},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0960787832736969}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6328050494194031},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5525151491165161},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5444106459617615},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4386330246925354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3511887192726135},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3428362011909485},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.21551033854484558},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15892294049263},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15298205614089966},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0960787832736969}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2003.1299894","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2003.1299894","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2003 Congress on Evolutionary Computation, 2003. CEC '03.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323954","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W139460058","https://openalex.org/W1497256448","https://openalex.org/W1509364972","https://openalex.org/W1525324048","https://openalex.org/W1550894544","https://openalex.org/W1783219955","https://openalex.org/W1881296051","https://openalex.org/W1969153299","https://openalex.org/W1974326986","https://openalex.org/W1998139877","https://openalex.org/W2002638840","https://openalex.org/W2008120462","https://openalex.org/W2008841836","https://openalex.org/W2033775040","https://openalex.org/W2044164898","https://openalex.org/W2047923658","https://openalex.org/W2074231493","https://openalex.org/W2097706568","https://openalex.org/W2101418959","https://openalex.org/W2102941368","https://openalex.org/W2106882534","https://openalex.org/W2127774996","https://openalex.org/W2130625618","https://openalex.org/W2141411672","https://openalex.org/W2143210482","https://openalex.org/W2144362290","https://openalex.org/W2152150600","https://openalex.org/W2154400062","https://openalex.org/W2163860567","https://openalex.org/W3023540311","https://openalex.org/W3150596086","https://openalex.org/W4234345926","https://openalex.org/W4239967865","https://openalex.org/W4285719527","https://openalex.org/W6605756403","https://openalex.org/W6631364128","https://openalex.org/W6638335597","https://openalex.org/W6639176605","https://openalex.org/W6674647444"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2149492307","https://openalex.org/W1985408726","https://openalex.org/W2141411672"],"abstract_inverted_index":{"In":[0],"previous":[1],"work,":[2],"we":[3],"have":[4],"proposed":[5],"a":[6,64,70],"parallel":[7,62],"hybrid":[8],"genetic":[9],"algorithm":[10],"(PHGA)":[11],"which":[12],"can":[13],"find":[14],"high":[15],"quality":[16],"solution":[17],"from":[18,50],"the":[19,23,33,41,51],"mathematical":[20],"viewpoint":[21],"for":[22],"multiple":[24],"protein":[25],"sequence":[26],"alignment.":[27],"We":[28,54],"present":[29],"new":[30],"improvements":[31],"to":[32,40,46,59,73],"PHGA.":[34],"Local":[35],"alignment":[36,49],"information":[37],"is":[38],"added":[39],"weighted":[42],"sum-of-pairs":[43],"objective":[44],"function":[45],"achieve":[47],"better":[48],"biological":[52],"viewpoint.":[53],"also":[55],"extend":[56],"our":[57],"method":[58],"run":[60],"in":[61],"on":[63],"cluster":[65],"of":[66,69],"machines":[67],"instead":[68],"multi-processor":[71],"machine":[72],"speed":[74],"it":[75],"up.":[76]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
