{"id":"https://openalex.org/W1541914161","doi":"https://doi.org/10.1109/cec.2003.1299595","title":"Permutation-based RNA secondary structure prediction via a genetic algorithm","display_name":"Permutation-based RNA secondary structure prediction via a genetic algorithm","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W1541914161","doi":"https://doi.org/10.1109/cec.2003.1299595","mag":"1541914161"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2003.1299595","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2003.1299595","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2003 Congress on Evolutionary Computation, 2003. CEC '03.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049270004","display_name":"Kay C. Wiese","orcid":"https://orcid.org/0000-0003-4507-1892"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"K.C. Wiese","raw_affiliation_strings":["Inf. Technol., Simon Fraser Univ., Surrey, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inf. Technol., Simon Fraser Univ., Surrey, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028696560","display_name":"A. Deschenes","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"A. Deschenes","raw_affiliation_strings":["Inf. Technol., Simon Fraser Univ., Surrey, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inf. Technol., Simon Fraser Univ., Surrey, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064231737","display_name":"Edward Glen","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"E. Glen","raw_affiliation_strings":["Inf. Technol., Simon Fraser Univ., Surrey, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inf. Technol., Simon Fraser Univ., Surrey, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2602,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.77188676,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"335","last_page":"342 Vol.1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/permutation","display_name":"Permutation (music)","score":0.6683422327041626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5721744894981384},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4384623169898987},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35401204228401184},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35019195079803467},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15699869394302368},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0871831476688385}],"concepts":[{"id":"https://openalex.org/C21308566","wikidata":"https://www.wikidata.org/wiki/Q7169365","display_name":"Permutation (music)","level":2,"score":0.6683422327041626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5721744894981384},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4384623169898987},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35401204228401184},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35019195079803467},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15699869394302368},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0871831476688385},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cec.2003.1299595","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2003.1299595","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2003 Congress on Evolutionary Computation, 2003. CEC '03.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1226599","https://openalex.org/W17748033","https://openalex.org/W99032621","https://openalex.org/W1482722110","https://openalex.org/W1497256448","https://openalex.org/W1507363803","https://openalex.org/W1516301787","https://openalex.org/W1519185585","https://openalex.org/W1522107594","https://openalex.org/W1544962352","https://openalex.org/W1576818901","https://openalex.org/W1859892029","https://openalex.org/W1969744746","https://openalex.org/W2007799540","https://openalex.org/W2010352098","https://openalex.org/W2040015982","https://openalex.org/W2075702353","https://openalex.org/W2091735434","https://openalex.org/W2096590200","https://openalex.org/W2145149786","https://openalex.org/W2164943294","https://openalex.org/W2976664243","https://openalex.org/W3149025087","https://openalex.org/W4234886514","https://openalex.org/W4285719527","https://openalex.org/W6600050089","https://openalex.org/W6600690991","https://openalex.org/W6604038483","https://openalex.org/W6628973536","https://openalex.org/W6630399596","https://openalex.org/W6630838125","https://openalex.org/W6631287414","https://openalex.org/W6634279960"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"new":[3],"results":[4,85,131],"with":[5,86,136],"a":[6,41,44,70,137],"permutation-based":[7,134],"genetic":[8],"algorithm":[9,23],"(GA)":[10],"to":[11,48],"predict":[12],"the":[13,21,50,84,111,121,130,133,141,144],"secondary":[14,51],"structure":[15,52],"of":[16,53,61,73,132,143],"RNA":[17,54,59],"molecules.":[18,55],"More":[19],"specifically,":[20],"proposed":[22,146],"predicts":[24],"which":[25],"canonical":[26],"base":[27],"pairs":[28],"forms":[29],"hydrogen":[30],"bonds":[31],"and":[32,66,75,78,94],"builds":[33],"helices,":[34],"also":[35,128],"known":[36],"as":[37,119],"stems.":[38],"We":[39,56,108,127],"discuss":[40],"GA":[42,135],"where":[43],"permutation":[45],"is":[46],"used":[47],"encode":[49],"have":[57,100],"tested":[58],"sequences":[60],"lengths":[62],"76,":[63],"210,":[64],"681,":[65],"785":[67],"nucleotides":[68],"over":[69],"wide":[71],"variety":[72],"operators":[74,89],"parameter":[76],"settings":[77],"focus":[79],"on":[80],"discussing":[81],"in":[82,104,120],"depth":[83],"two":[87],"crossover":[88],"asymmetric":[90],"edge":[91,96],"recombinations":[92],"(ASERC)":[93],"symmetric":[95],"recombination":[97],"(SYMERC)":[98],"that":[99,110],"not":[101],"been":[102],"analyzed":[103],"this":[105],"domain":[106],"previously.":[107],"demonstrate":[109],"keep-best":[112],"reproduction":[113],"(KBR)":[114],"operator":[115],"has":[116],"similar":[117],"benefits":[118,142],"travelling":[122],"salesman":[123],"problem":[124],"(TSP)":[125],"domain.":[126],"compare":[129],"binary":[138],"GA,":[139],"demonstrating":[140],"newly":[145],"representation.":[147]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}