{"id":"https://openalex.org/W4391020158","doi":"https://doi.org/10.1109/cdc49753.2023.10384032","title":"SINDy-CRN: Sparse Identification of Chemical Reaction Networks from Data","display_name":"SINDy-CRN: Sparse Identification of Chemical Reaction Networks from Data","publication_year":2023,"publication_date":"2023-12-13","ids":{"openalex":"https://openalex.org/W4391020158","doi":"https://doi.org/10.1109/cdc49753.2023.10384032"},"language":"en","primary_location":{"id":"doi:10.1109/cdc49753.2023.10384032","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc49753.2023.10384032","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 62nd IEEE Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.rug.nl/en/publications/8980c4b7-01f2-416a-9cb3-9bded300dd5d","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101847228","display_name":"Nirav Bhatt","orcid":"https://orcid.org/0000-0003-0928-6028"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Nirav Bhatt","raw_affiliation_strings":["Indian Institute of Technology,Department of Biotechnology, Research Center for Data Science and AI (DSAI),Madras,India","Department of Biotechnology, Research Center for Data Science and AI (DSAI), Indian Institute of Technology, Madras, India"],"affiliations":[{"raw_affiliation_string":"Indian Institute of Technology,Department of Biotechnology, Research Center for Data Science and AI (DSAI),Madras,India","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Department of Biotechnology, Research Center for Data Science and AI (DSAI), Indian Institute of Technology, Madras, India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023001118","display_name":"Bayu Jayawardhana","orcid":"https://orcid.org/0000-0003-0987-0347"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Bayu Jayawardhana","raw_affiliation_strings":["Engineering and Technology Institute Groningen, University of Groningen,Faculty of Science and Engineering,Groningen,The Netherlands,9747AG"],"affiliations":[{"raw_affiliation_string":"Engineering and Technology Institute Groningen, University of Groningen,Faculty of Science and Engineering,Groningen,The Netherlands,9747AG","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111114723","display_name":"Santiago S\u00e1nchez-Escalonilla Plaza","orcid":null},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Santiago S\u00e1nchez-Escalonilla Plaza","raw_affiliation_strings":["Engineering and Technology Institute Groningen, University of Groningen,Faculty of Science and Engineering,Groningen,The Netherlands,9747AG"],"affiliations":[{"raw_affiliation_string":"Engineering and Technology Institute Groningen, University of Groningen,Faculty of Science and Engineering,Groningen,The Netherlands,9747AG","institution_ids":["https://openalex.org/I169381384"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101847228"],"corresponding_institution_ids":["https://openalex.org/I24676775"],"apc_list":null,"apc_paid":null,"fwci":0.9455,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.76758549,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"3512","last_page":"3518"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10876","display_name":"Fault Detection and Control Systems","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10791","display_name":"Advanced Control Systems Optimization","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7383756637573242},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7267340421676636},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.5952504277229309},{"id":"https://openalex.org/keywords/chemical-reaction","display_name":"Chemical reaction","score":0.4588090181350708},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.43682122230529785},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4275043308734894},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.41676050424575806},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.4121595025062561},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36313414573669434},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1484866440296173},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10373750329017639}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7383756637573242},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7267340421676636},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.5952504277229309},{"id":"https://openalex.org/C177801218","wikidata":"https://www.wikidata.org/wiki/Q36534","display_name":"Chemical reaction","level":2,"score":0.4588090181350708},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.43682122230529785},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4275043308734894},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.41676050424575806},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.4121595025062561},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36313414573669434},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1484866440296173},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10373750329017639},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/cdc49753.2023.10384032","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc49753.2023.10384032","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 62nd IEEE Conference on Decision and Control (CDC)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.rug.nl:openaire/8980c4b7-01f2-416a-9cb3-9bded300dd5d","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/8980c4b7-01f2-416a-9cb3-9bded300dd5d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bhatt, N, Jayawardhana, B & Plaza, S S E 2023, SINDy-CRN : Sparse Identification of Chemical Reaction Networks from Data. in 2023 62nd IEEE Conference on Decision and Control, CDC 2023. Proceedings of the IEEE Conference on Decision and Control, Institute of Electrical and Electronics Engineers Inc., pp. 3512-3518, 62nd IEEE Conference on Decision and Control, CDC 2023, Singapore, Singapore, 13/12/2023. https://doi.org/10.1109/CDC49753.2023.10384032","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.rug.nl:openaire_cris_publications/8980c4b7-01f2-416a-9cb3-9bded300dd5d","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/8980c4b7-01f2-416a-9cb3-9bded300dd5d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bhatt, N, Jayawardhana, B & Plaza, S S E 2023, SINDy-CRN : Sparse Identification of Chemical Reaction Networks from Data. in 2023 62nd IEEE Conference on Decision and Control, CDC 2023. Proceedings of the IEEE Conference on Decision and Control, Institute of Electrical and Electronics Engineers Inc., pp. 3512-3518, 62nd IEEE Conference on Decision and Control, CDC 2023, Singapore, Singapore, 13/12/2023. https://doi.org/10.1109/CDC49753.2023.10384032","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:pure.rug.nl:openaire/8980c4b7-01f2-416a-9cb3-9bded300dd5d","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/8980c4b7-01f2-416a-9cb3-9bded300dd5d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bhatt, N, Jayawardhana, B & Plaza, S S E 2023, SINDy-CRN : Sparse Identification of Chemical Reaction Networks from Data. in 2023 62nd IEEE Conference on Decision and Control, CDC 2023. Proceedings of the IEEE Conference on Decision and Control, Institute of Electrical and Electronics Engineers Inc., pp. 3512-3518, 62nd IEEE Conference on Decision and Control, CDC 2023, Singapore, Singapore, 13/12/2023. https://doi.org/10.1109/CDC49753.2023.10384032","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1502848176","display_name":null,"funder_award_id":"P18-03","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G486964816","display_name":null,"funder_award_id":"project 6","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G629491556","display_name":null,"funder_award_id":"(NWO)","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320322211","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W28797422","https://openalex.org/W1982649005","https://openalex.org/W2047094774","https://openalex.org/W2133068979","https://openalex.org/W2152740075","https://openalex.org/W2239232218","https://openalex.org/W2582761891","https://openalex.org/W2594837916","https://openalex.org/W2761573724","https://openalex.org/W2912723153","https://openalex.org/W2951191580","https://openalex.org/W2963739154","https://openalex.org/W2964145209","https://openalex.org/W2979477170","https://openalex.org/W3008009751","https://openalex.org/W3014869516","https://openalex.org/W3085462416","https://openalex.org/W3086458503","https://openalex.org/W3092527036","https://openalex.org/W3215447930","https://openalex.org/W4200598912","https://openalex.org/W4226206795","https://openalex.org/W6732924702"],"related_works":["https://openalex.org/W1919101720","https://openalex.org/W4390822878","https://openalex.org/W2898732673","https://openalex.org/W96888382","https://openalex.org/W2041308758","https://openalex.org/W4386126592","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W4392529072","https://openalex.org/W3123203398"],"abstract_inverted_index":{"This":[0],"work":[1],"considers":[2],"an":[3,19],"important":[4],"problem":[5],"of":[6,10,34,46,50,71,77],"identifying":[7,74],"the":[8,32,44,47,69],"dynamics":[9,52],"chemical":[11,24],"reaction":[12,25],"networks":[13,26],"from":[14,28,60],"time-series":[15],"data.":[16],"We":[17,62],"propose":[18],"approach":[20],"to":[21,57],"identify":[22],"complex":[23],"(CRN)":[27],"concentration":[29],"data":[30,58],"using":[31,85],"concept":[33],"sparse":[35,48],"model":[36],"identification.":[37],"Particularly,":[38],"we":[39],"demonstrate":[40],"challenges":[41],"associated":[42],"with":[43],"application":[45],"identification":[49],"nonlinear":[51],"(SINDy)":[53],"and":[54],"its":[55],"variants":[56],"obtained":[59],"CRNs.":[61],"develop":[63],"a":[64,78,86],"SINDy-CRN":[65],"algorithm":[66,82],"based":[67],"on":[68],"properties":[70],"CRNs":[72],"for":[73],"governing":[75],"equations":[76],"CRN.":[79],"The":[80],"proposed":[81],"is":[83],"illustrated":[84],"numerical":[87],"simulation":[88],"example.":[89]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
